View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7427_high_8 (Length: 408)
Name: NF7427_high_8
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7427_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 389
Target Start/End: Complemental strand, 45955238 - 45954858
Alignment:
| Q |
16 |
atcaactatctttccctcctttagcttcttctctttctgatttcaatggagcaagacttcaaactcaaattcaggttctacactcttttcattctctcta |
115 |
Q |
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| T |
45955238 |
atcaactatctttccctcctttagcttcttctctttctgatttcaatggagcaagacttcaaactcatattcaggttctacactcttttcattctctcta |
45955139 |
T |
|
| Q |
116 |
tttacacatcataatcactttcatttcatgcattgcaatcacaatgttgatgctacata---gacgttgcttgataaatacttgtat-----tttgtctt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |
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| T |
45955138 |
tttacacatcataatcactttcatttcatgcattgcaatcacaatgttgatgctacatagacgacgttgcttgatcaatacttgtattttaatttgtctt |
45955039 |
T |
|
| Q |
208 |
gttgagttgagctgactagactatataatactctcgaaataattttggttacagttgaaaagaaaaacatggcagccaaaaggttctttaattgtctcag |
307 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45955038 |
gttgagttgagctgactagactatat-atactctcgaaataattttggttacagttgaaaagaaaaacatggcagccaaaaggttctttaattgtctcag |
45954940 |
T |
|
| Q |
308 |
catcaagcaccaagaaaatcctcataatgggaggtactagattcattggtgtgtttttgtcaaggcaacttgtcaaagaagg |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45954939 |
catcaagcaccaagaaaatcctcataatgggaggtactagattcattggtgtgtttttgtcaaggcaacttgtcaaagaagg |
45954858 |
T |
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