View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7427_low_10 (Length: 396)
Name: NF7427_low_10
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7427_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 40494803 - 40495112
Alignment:
| Q |
13 |
atcaaaggtatttttccaaaagtacctctgctgggataatcgatacatttcattttatttacaatcaaattaaaatacctttgattgtaaatcaattttt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40494803 |
atcaaaggtatttttccaaaagtacctctgctgggataatcgatacatttcattttatttacaatcaaattaaaatacctttgattgtaaatcaattttt |
40494902 |
T |
|
| Q |
113 |
attcttctggaatttaatcgcaaaaagacctttgattgttcaactgggttgatgaattcaatcaactggatttgtgatgaaaaatagaacgcagtaatga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40494903 |
attcttctggaatttaatcgcaaaaagacctttgattgttcaactgggttgatgaattcaatcaactggatttgtgatgaaaaatagaacgcagtaatga |
40495002 |
T |
|
| Q |
213 |
cctatactatcatgatcatggaaagaaaacacaaaaagggcatctaaaagagaaatctaaaattatttataaaattgattcaatctcatgagaatatatt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40495003 |
cctatactatcatgatcatggaaagaaaacacaaaaagggcatctaaaagagaaatctaaaattatttataaaattgattcaatctcatgagaatatatt |
40495102 |
T |
|
| Q |
313 |
taaatcgatg |
322 |
Q |
| |
|
|||||||||| |
|
|
| T |
40495103 |
taaatcgatg |
40495112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 22111648 - 22111619
Alignment:
| Q |
13 |
atcaaaggtatttttccaaaagtacctctg |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
22111648 |
atcaaaggtatttttccaaaagtacctctg |
22111619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 48117670 - 48117487
Alignment:
| Q |
13 |
atcaaaggtatttttccaaaagtacctctgctgggataatcgatacatttcattttatttacaatcaaattaaaatacctttgattgtaaatcaattttt |
112 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48117670 |
atcaaaggtattcttccaaaagtatctctgctgggataatcgatacattttattttatttacaatcaaattaaaatatctttgattgtaaatcaattttt |
48117571 |
T |
|
| Q |
113 |
attcttctggaatttaatcgcaaaaagacctttgattgttcaactgggttgatgaattcaatcaactggatttgtgatgaaaaa |
196 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48117570 |
attcttctggaattcaatcgcaaaaagacctttgattgttcaactgggttgatgaattcaatcaactggatttgtgataaaaaa |
48117487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 347 - 385
Target Start/End: Complemental strand, 29441910 - 29441871
Alignment:
| Q |
347 |
tgatatatgcaagatccgagattcaaac-ccgaccaccac |
385 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29441910 |
tgatatatgcaagatccgagattcaaactccgaccaccac |
29441871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University