View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7427_low_11 (Length: 388)
Name: NF7427_low_11
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7427_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 56 - 371
Target Start/End: Complemental strand, 18225139 - 18224823
Alignment:
| Q |
56 |
taatactaaattatatcacgttcaaccaattttttgtgttgcaaaaccaaacatacacttaagaagttaaagtgacatgtgttcaacaacttatatgaat |
155 |
Q |
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| T |
18225139 |
taatactaaattatatcacgttcaaccaattttttgtgttgcaaaactaaacatacacttaagaagttaaagtgacatgtgttcaacaacttatatgaat |
18225040 |
T |
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| Q |
156 |
taccaaagcaacagccttatattcgaggtgttgaaattatattagttagttatgtattttgttgaaacaaaaaatgctgtgacttgcgggtgaaggaatt |
255 |
Q |
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| T |
18225039 |
taccaaagcaacaaccttatattcgaggtgttgaaattatattagttaattatgtattttgctgaaataaacaatggtgtgacttgcgggtgaaggaatt |
18224940 |
T |
|
| Q |
256 |
tgatgaagttagtatgttttttctcacaccaacattgaaaatgg-gggcatattggtaatttaaaaaatattgtgcacaaacgtagtgtgagaagaatct |
354 |
Q |
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| T |
18224939 |
tgatgaagttagtatgtttgttctcacaccaacattgaaaatggagggcatattggtaatttaataaatattgtgcacaaacgctgtgtgagaagaatct |
18224840 |
T |
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| Q |
355 |
gtaatcatgatcatcat |
371 |
Q |
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| T |
18224839 |
gtaatcatgatcatcat |
18224823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 18229479 - 18229368
Alignment:
| Q |
228 |
aatgctgtgacttgcgggtgaaggaatttgatgaagttagtatgtttt---ttctcacaccaacattgaaaat----gggggcatattggtaatttaaaa |
320 |
Q |
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| T |
18229479 |
aatgatgtgacttgcggttgaaggaatttgatgaagttagcatgttttttcttctcacatcaacattgagaatagggagggacatatccgtaatttaaaa |
18229380 |
T |
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| Q |
321 |
aatattgtgcac |
332 |
Q |
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| T |
18229379 |
aatatcgtgcac |
18229368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 43017567 - 43017502
Alignment:
| Q |
71 |
tcacgttcaaccaattttttgt-gttgcaaaaccaaacatacacttaagaagttaaagtgacatgt |
135 |
Q |
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| T |
43017567 |
tcacgttcaaccaactttttgttggtgcaaaaccaaacatacacttaacaagttaatgtgacatgt |
43017502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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