View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7427_low_14 (Length: 371)
Name: NF7427_low_14
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7427_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 23 - 358
Target Start/End: Complemental strand, 29607215 - 29606868
Alignment:
| Q |
23 |
agtattatcatcagccagtggtgctgggggactcctcctaatgattgttgaacttgaacttgtaggctctggtgctagagctagtgcgtgatgtttctta |
122 |
Q |
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| T |
29607215 |
agtattatcatcagccagtggtgctgggggactcctcctaatgattgttgaacttgaacttgtaggctctggtgctagagctagtgcgtgatgtttctta |
29607116 |
T |
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| Q |
123 |
tgcttactatgcttgtgttttcttctcttgtgcttgtggggtggcggtggttctggcgcatcatcttcaggcgatggtgct------------ggtgtgt |
210 |
Q |
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| T |
29607115 |
tgcttactatgcttgtgttttcttctcttgtgcttgtggggtggcggtggttctggcgcatcatcttcaggcgatggtgctggtgctgatgatggtgtgt |
29607016 |
T |
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| Q |
211 |
ctattgcaggtgttggtgcaggtgatggtgggagaattgctggggaaggaacaggtgatgattttggtgctttcttctttttgtgtgtaggtgctggtgc |
310 |
Q |
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| T |
29607015 |
ctattgcaggtgttggtgcaggtgatggtgggagaattgctggggaaggaacaggtgatgattttggtgctttcttctttttgtgtgtaggtgctggtgc |
29606916 |
T |
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| Q |
311 |
cggtgtttctttgtctggtgcgggtgctggtgctttcttttcgtgtgt |
358 |
Q |
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| T |
29606915 |
cggtgtttctttgtctggtgcgggtgctggtgctttctttttgtgtgt |
29606868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 29606881 - 29606828
Alignment:
| Q |
285 |
ttctttttgtgtgtaggtgctggtgccggtgtttctttgtctggtgcgggtgct |
338 |
Q |
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| T |
29606881 |
ttctttttgtgtgtaggtgctggtgctggtgcttctttggccggtgctggtgct |
29606828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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