View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7427_low_16 (Length: 358)
Name: NF7427_low_16
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7427_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 109; Significance: 9e-55; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 3020538 - 3020703
Alignment:
| Q |
19 |
atccctaccttggaagaaaatttgttgaagnnnnnnngttgatgttgtgagactccaacacaaattcatcaccccctgttgacatctatcacagacctaa |
118 |
Q |
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| T |
3020538 |
atccctgccttggaagaaaatttgttgaagaaaaaaagttgatgttatgagactccagcacaaattcatcaccccctattgacatctatcactgacctaa |
3020637 |
T |
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| Q |
119 |
attttgaaggttgat-aaaaaataatgtagtagttaccaaagtttatgagatacgaataacattgg |
183 |
Q |
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| T |
3020638 |
attttgcaggttgataaaaaaataatgtagtcgttaccaaagtttatgagatacgaataacattgg |
3020703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 212 - 347
Target Start/End: Original strand, 3020732 - 3020867
Alignment:
| Q |
212 |
ccatgggataatgggaaatgaatgatttctagatctgattgttacatcaatattggtatacactgagatcttgttnnnnnnngtattacacaacaatatt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||| ||||||||||| |
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| T |
3020732 |
ccatgggataatgggaaatgaatgatttctagatctgattgttacatcaatattggtatgcactgagatcttgctaaaaaaagtattagacaacaatatt |
3020831 |
T |
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| Q |
312 |
gctttttaacaggccatcgttttaaggacttttcat |
347 |
Q |
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| T |
3020832 |
gctttttaacaggccatcgttttaaggacttttcat |
3020867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 32 - 170
Target Start/End: Original strand, 3022220 - 3022358
Alignment:
| Q |
32 |
aagaaaatttgttgaagnnnnnnngttgatgttgtgagactccaacacaaattcatcaccccctgttgacatctatcacagacctaaattttgaaggttg |
131 |
Q |
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| T |
3022220 |
aagaaaatttgttgaagaaaaaaagttgatgttatgagactccatcacaaactcatcaccccctcttgatatcaatcactgacctaaattttgaaggttg |
3022319 |
T |
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| Q |
132 |
ataaaaaataatgtagtagttaccaaagtttatgagata |
170 |
Q |
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| T |
3022320 |
ataaaaaataatgtagtggtcaccaatgtttatgagata |
3022358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 347
Target Start/End: Original strand, 3018705 - 3018816
Alignment:
| Q |
233 |
atgatttctagatctgattgttacatcaatattggtatacactgagatcttgttnnnnnnngtattacacaacaatattgctttttaacaggccatcgtt |
332 |
Q |
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| T |
3018705 |
atgattttcagatctgattgtcacatcaatattggtatacactgagatc---ataaaaaaagtgatacacagcaatattgctttttattaggccatcttt |
3018801 |
T |
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| Q |
333 |
ttaaggacttttcat |
347 |
Q |
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| T |
3018802 |
ttaaggacttttcat |
3018816 |
T |
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