View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7427_low_17 (Length: 350)
Name: NF7427_low_17
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7427_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 15630933 - 15631160
Alignment:
| Q |
20 |
atactctactctatttcatcaattgcatgcggtactgaactcaataaggaacgcttgaccaataatacatgctttgcatctcgcaaagtaaagtatcgct |
119 |
Q |
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| T |
15630933 |
atactctactctactttatcaattgcatgcggtactgaactcaataaggaacgcttgaccaataatacatgctttgcatctcgcagagtaaagtatcgct |
15631032 |
T |
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| Q |
120 |
cattttggtgaatgccatagattgcacacgtaactagtttgataatatcaagtgctcgttagggtattcatctccaagccaccaaggacttttcccaccc |
219 |
Q |
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| T |
15631033 |
cattttggtgaatgccatagattgcacacgtaactaatttgataatatcaagtgctcgttagggtattcatctccaagccaccaaggacttttcccaccc |
15631132 |
T |
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| Q |
220 |
ttgatcacgac-ttcgcatctccctcat |
246 |
Q |
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| T |
15631133 |
ttgatcacgactttggcatctccctcat |
15631160 |
T |
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