View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7427_low_20 (Length: 303)

Name: NF7427_low_20
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7427_low_20
NF7427_low_20
[»] chr3 (54 HSPs)
chr3 (18-295)||(3754593-3754870)
chr3 (19-289)||(4141922-4142186)
chr3 (35-289)||(4157745-4157996)
chr3 (217-288)||(2456249-2456320)
chr3 (224-289)||(968670-968735)
chr3 (210-295)||(989389-989474)
chr3 (223-295)||(2678385-2678457)
chr3 (232-295)||(803213-803276)
chr3 (229-295)||(1007454-1007520)
chr3 (229-295)||(1022482-1022548)
chr3 (220-289)||(1931137-1931206)
chr3 (232-289)||(2696727-2696784)
chr3 (239-288)||(13498224-13498273)
chr3 (224-295)||(2686299-2686373)
chr3 (213-285)||(9587161-9587233)
chr3 (239-290)||(9608346-9608397)
chr3 (241-295)||(997569-997623)
chr3 (241-295)||(1013959-1014013)
chr3 (226-288)||(2644351-2644413)
chr3 (226-288)||(2659141-2659203)
chr3 (239-288)||(771501-771550)
chr3 (220-289)||(1940562-1940631)
chr3 (222-295)||(3746001-3746074)
chr3 (232-288)||(2442039-2442095)
chr3 (239-287)||(2631358-2631406)
chr3 (239-286)||(2459277-2459324)
chr3 (213-288)||(7334215-7334290)
chr3 (239-289)||(1891066-1891116)
chr3 (223-289)||(7432040-7432106)
chr3 (211-288)||(956381-956458)
chr3 (239-288)||(7324433-7324482)
chr3 (239-288)||(37753347-37753396)
chr3 (239-288)||(43991960-43992009)
chr3 (229-289)||(1936972-1937032)
chr3 (220-288)||(2476634-2476702)
chr3 (220-288)||(7942485-7942553)
chr3 (213-288)||(783775-783850)
chr3 (226-288)||(2502148-2502210)
chr3 (234-288)||(12133097-12133151)
chr3 (228-278)||(44001605-44001655)
chr3 (239-288)||(754611-754660)
chr3 (239-280)||(1438003-1438044)
chr3 (239-288)||(9561987-9562036)
chr3 (221-286)||(23197014-23197079)
chr3 (239-287)||(2492083-2492131)
chr3 (239-282)||(7427607-7427650)
chr3 (239-282)||(12218033-12218076)
chr3 (220-282)||(13479584-13479646)
chr3 (239-276)||(746385-746422)
chr3 (239-288)||(7430538-7430587)
chr3 (242-287)||(7442982-7443027)
chr3 (239-288)||(9565831-9565880)
chr3 (245-278)||(37757744-37757777)
chr3 (239-287)||(768331-768379)
[»] chr5 (17 HSPs)
chr5 (24-289)||(11081812-11082077)
chr5 (229-289)||(23766854-23766914)
chr5 (229-289)||(23816702-23816762)
chr5 (220-289)||(23769629-23769698)
chr5 (220-289)||(23819477-23819546)
chr5 (239-288)||(20292995-20293044)
chr5 (225-289)||(23732166-23732230)
chr5 (239-289)||(3181716-3181766)
chr5 (239-288)||(20301443-20301492)
chr5 (239-288)||(20305856-20305905)
chr5 (239-288)||(20310260-20310309)
chr5 (220-289)||(23861009-23861078)
chr5 (223-295)||(1427679-1427751)
chr5 (241-289)||(41973474-41973522)
chr5 (220-289)||(23764243-23764312)
chr5 (220-289)||(23814076-23814145)
chr5 (239-288)||(6401768-6401817)
[»] scaffold0044 (1 HSPs)
scaffold0044 (220-290)||(89141-89211)
[»] chr7 (4 HSPs)
chr7 (220-290)||(39298975-39299045)
chr7 (211-288)||(1078134-1078211)
chr7 (239-289)||(1421171-1421221)
chr7 (239-284)||(3927063-3927108)
[»] chr4 (5 HSPs)
chr4 (220-285)||(22672110-22672175)
chr4 (211-289)||(20019746-20019824)
chr4 (239-288)||(11032910-11032959)
chr4 (232-276)||(20016180-20016224)
chr4 (227-278)||(55419792-55419843)
[»] chr1 (9 HSPs)
chr1 (220-289)||(51381438-51381507)
chr1 (238-290)||(23896138-23896190)
chr1 (239-288)||(24629213-24629262)
chr1 (246-289)||(24246506-24246549)
chr1 (239-290)||(25478863-25478914)
chr1 (239-289)||(24242859-24242909)
chr1 (239-289)||(51782798-51782848)
chr1 (239-289)||(51858605-51858655)
chr1 (249-289)||(24634817-24634857)
[»] chr8 (1 HSPs)
chr8 (221-295)||(19727874-19727948)
[»] chr2 (10 HSPs)
chr2 (239-288)||(36577366-36577415)
chr2 (243-288)||(33026657-33026702)
chr2 (213-288)||(7160730-7160805)
chr2 (214-285)||(7168667-7168738)
chr2 (243-290)||(33038158-33038205)
chr2 (214-288)||(7156169-7156243)
chr2 (234-278)||(6538844-6538888)
chr2 (220-288)||(7174356-7174424)
chr2 (243-287)||(33020314-33020358)
chr2 (239-288)||(34570471-34570520)
[»] scaffold0015 (2 HSPs)
scaffold0015 (239-290)||(32331-32382)
scaffold0015 (239-289)||(40383-40433)
[»] scaffold0200 (1 HSPs)
scaffold0200 (241-289)||(782-830)
[»] chr6 (12 HSPs)
chr6 (229-285)||(370777-370833)
chr6 (239-287)||(24417488-24417536)
chr6 (227-282)||(1442098-1442153)
chr6 (239-286)||(19119065-19119112)
chr6 (239-286)||(19126359-19126406)
chr6 (238-284)||(9819830-9819876)
chr6 (227-277)||(176345-176395)
chr6 (234-284)||(7564748-7564798)
chr6 (238-284)||(9825516-9825562)
chr6 (239-284)||(1459543-1459588)
chr6 (239-284)||(1470925-1470970)
chr6 (239-284)||(9703888-9703933)
[»] scaffold1004 (1 HSPs)
scaffold1004 (240-287)||(2144-2191)
[»] scaffold0760 (1 HSPs)
scaffold0760 (240-287)||(4639-4686)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 54)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 3754870 - 3754593
Alignment:
Q  18 cctagcatagagaagatggtgatattaaactttcaccacagacttctggagtatatttaaagttaatagccttcaaggtactgctcctggggttgtaaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3754870 cctagcatagagaagatggtgatattaaactttcaccacagacttctggagtatatttaaagttaatagccttcaaggtaccgctcctggggttgtaaag 3754771  T
Q  118 aaccaaattcaagtcaatatcattcataaacttcagcaacacttgatcatcctcaaaagtatacaatgccttcgcaaaggccttaggtttagaaggatct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||    
T  3754770 aaccaaattcaagtcaatatcattcataaacttcagcaacacttgatcatcctcaaaagtatacaatgccttcgcaaagacctcgggtttagaaggatct 3754671  T
Q  218 ctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 295  Q
    |||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3754670 ctcatgcaaggaatagtaaacaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 3754593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 4141922 - 4142186
Alignment:
Q  19 ctagcatagagaagatggtgatattaaactttcaccacagacttctggagtatatttaaagttaatagccttcaaggtactgctcctggggttgtaaaga 118  Q
    |||||||||||||   |||||||||||||||||| |||||||||| ||| |   |||||| ||| ||||||| || ||||  |||||||| |||||||||    
T  4141922 ctagcatagagaactaggtgatattaaactttcaacacagacttcaggaattcgtttaaaattagtagccttgaaagtacccctcctgggattgtaaaga 4142021  T
Q  119 accaaattcaagtcaatatcattcataaacttcagcaacacttgatcatcctcaaaagtatacaatgccttcgcaaaggccttaggtttagaaggatctc 218  Q
    | |||||||||||||| |||||      |||||||||||||||||||||||||||||  ||| | |||| | |||  | |||||||||||||||||||||    
T  4142022 atcaaattcaagtcaaaatcat------acttcagcaacacttgatcatcctcaaaaacatatattgccctggcatcgaccttaggtttagaaggatctc 4142115  T
Q  219 tcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4142116 tcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatca 4142186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 35 - 289
Target Start/End: Original strand, 4157745 - 4157996
Alignment:
Q  35 ggtgatattaaactttcaccacagacttctggagtatatttaaagttaatagccttcaaggtactgctcctggggttgtaaagaaccaaattcaagtcaa 134  Q
    ||||||||||||||||||  ||| ||||| ||| |   |||||| ||| |||||||||| || | |||||||||||||||||| |||||||||||||||     
T  4157745 ggtgatattaaactttcaatacatacttcaggaattagtttaaaattagtagccttcaaagtgccgctcctggggttgtaaaggaccaaattcaagtcag 4157844  T
Q  135 tatcattcataaacttcagcaacacttgatcatcctcaaaagtatacaatgccttcgcaaaggccttaggtttagaaggatctctcatgtaaggaatagt 234  Q
     ||||| ||   ||| |||||||||||||||||||||||||  ||| | |||||| ||||| ||||||  ||||||||||| |||| ||||||  |||||    
T  4157845 aatcataca---actccagcaacacttgatcatcctcaaaaacatatattgccttggcaaaagccttaaatttagaaggatgtctcttgtaagagatagt 4157941  T
Q  235 gaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4157942 gaacaatttagtccaagactctttatttccatattccttcataagccaaacatca 4157996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 2456320 - 2456249
Alignment:
Q  217 tctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    ||||||||||||||||  | | |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2456320 tctcatgtaaggaatatggtacaatttagtccaagagtctttatttccatattccttcataacccaaacatc 2456249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 968735 - 968670
Alignment:
Q  224 taaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    |||| ||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  968735 taagaaatagtgaataatttagtccatgactctttatttccatgttccttcataacccaaacatca 968670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 295
Target Start/End: Complemental strand, 989474 - 989389
Alignment:
Q  210 aaggatctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 295  Q
    ||||||||  |||||||| ||||||||| |||||||||||||||||||||||||| || || ||||| |||||||||||| |||||    
T  989474 aaggatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcacca 989389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 2678385 - 2678457
Alignment:
Q  223 gtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 295  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||||||  |||||||||||||||||| |||||    
T  2678385 gtaaggaatagtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacatcatcacca 2678457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 803213 - 803276
Alignment:
Q  232 agtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 295  Q
    |||||| || ||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  803213 agtgaacaacttagtccaagactctttatttccatattctttcataacccaaacatcatcacca 803276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 1007520 - 1007454
Alignment:
Q  229 aatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 295  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||| |||||    
T  1007520 aatagtgaacaatttagtccaggactcgttatttccatattccttcattacccaaacatcatcacca 1007454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 1022548 - 1022482
Alignment:
Q  229 aatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 295  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||| |||||    
T  1022548 aatagtgaacaatttagtccatgactcgttatttccatattccttcattacccaaacatcatcacca 1022482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 1931137 - 1931206
Alignment:
Q  220 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    |||||||| ||||||||| ||||||||||| || ||||||||||||| |||| |||||||||||||||||    
T  1931137 catgtaagaaatagtgaacaatttagtccaggagtctttatttccatgttccatcataacccaaacatca 1931206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 2696727 - 2696784
Alignment:
Q  232 agtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  2696727 agtgaacaatttaatccaagactctttatttccatattccttcataatccaaacatca 2696784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 13498273 - 13498224
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 295
Target Start/End: Original strand, 2686299 - 2686373
Alignment:
Q  224 taaggaatagtgaaaaatttagtccaagactctttatttccatattccttc---ataacccaaacatcaacacca 295  Q
    |||||||||||||| |||||| ||||||||||||| |||||||||||||||   ||||||||||||||| |||||    
T  2686299 taaggaatagtgaacaatttattccaagactctttttttccatattccttcataataacccaaacatcatcacca 2686373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 9587161 - 9587233
Alignment:
Q  213 gatctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaac 285  Q
    |||||| ||||||||||||| || | ||||| ||||||| |||||||||||||||||||||||||| ||||||    
T  9587161 gatctcccatgtaaggaatattgtacaattttgtccaaggctctttatttccatattccttcataatccaaac 9587233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 9608346 - 9608397
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatcaa 290  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  9608346 aatttagtccaagaatctatatttccatattccttcataacccaaacatcaa 9608397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 997623 - 997569
Alignment:
Q  241 tttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 295  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| || |||||    
T  997623 tttagtccaagactctttatttccatattccttcattacccaaacaacatcacca 997569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 1014013 - 1013959
Alignment:
Q  241 tttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 295  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| || |||||    
T  1014013 tttagtccaagactctttatttccatattccttcattacccaaacaacatcacca 1013959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 2644351 - 2644413
Alignment:
Q  226 aggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    |||||||||| | ||||||||||||||||||| ||||||||| |||||||||| |||||||||    
T  2644351 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2644413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 2659141 - 2659203
Alignment:
Q  226 aggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    |||||||||| | ||||||||||||||||||| ||||||||| |||||||||| |||||||||    
T  2659141 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2659203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 771501 - 771550
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  771501 aatttagtccaagagtctgtatttccatattccttcataacccaaacatc 771550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 1940562 - 1940631
Alignment:
Q  220 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    |||| ||| ||||||||| ||||||||||| || |||| |||||||| ||||||||||||||||||||||    
T  1940562 catgcaagaaatagtgaacaatttagtccacgagtcttgatttccatgttccttcataacccaaacatca 1940631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 3746074 - 3746001
Alignment:
Q  222 tgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 295  Q
    ||||||||||||| || |||||||||||||||||||  ||| ||||||||||||||| ||||| |||| |||||    
T  3746074 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcacca 3746001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 2442095 - 2442039
Alignment:
Q  232 agtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    |||||| |||||||||||||| |||||||||||||| |||||||||| |||||||||    
T  2442095 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 2442039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 2631406 - 2631358
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacat 287  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  2631406 aatttagtccaagactcttgatttccatattccttcataatccaaacat 2631358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 2459324 - 2459277
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaaca 286  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||    
T  2459324 aattttgtccaagactctttatttccatattccttcataatccaaaca 2459277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 7334215 - 7334290
Alignment:
Q  213 gatctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    ||||| ||| || |||||||||| | |||||||||||||||||||||||||| || |||||||| | |||||||||    
T  7334215 gatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcatgatccaaacatc 7334290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 1891066 - 1891116
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    |||||||||||||| ||||||||||||| ||||||||||| ||||||||||    
T  1891066 aatttagtccaagagtctttatttccatgttccttcataatccaaacatca 1891116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 7432040 - 7432106
Alignment:
Q  223 gtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    ||||| ||| ||||| ||||||||||| || ||||||||||||||||||||||||  ||||||||||    
T  7432040 gtaagaaatggtgaacaatttagtccacgattctttatttccatattccttcatactccaaacatca 7432106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 956458 - 956381
Alignment:
Q  211 aggatctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    |||||||  ||||| || |||| |||| ||||||  |||||||||||| ||||||||||||||||||| |||||||||    
T  956458 aggatcttgcatgtgagaaataatgaacaatttatgccaagactctttttttccatattccttcataatccaaacatc 956381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 7324433 - 7324482
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    |||||||||||||||||||||||||| || |||||||||| |||||||||    
T  7324433 aatttagtccaagactctttatttccgtagtccttcataatccaaacatc 7324482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 37753347 - 37753396
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    |||||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  37753347 aatttagtccaagactctttctttccatattcctccataatccaaacatc 37753396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 43992009 - 43991960
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    ||||| |||||||||||| ||||||||||||||||||||| |||||||||    
T  43992009 aatttggtccaagactctatatttccatattccttcataatccaaacatc 43991960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 1936972 - 1937032
Alignment:
Q  229 aatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    ||||||||| ||||||| ||| || |||||||||  |||||||||||||||||||||||||    
T  1936972 aatagtgaacaatttagaccaggattctttatttttatattccttcataacccaaacatca 1937032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 2476702 - 2476634
Alignment:
Q  220 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    ||||| ||||| |||| | ||||||||||||||||||||||||||||| |  ||||||| |||||||||    
T  2476702 catgttaggaacagtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 2476634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 7942553 - 7942485
Alignment:
Q  220 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    ||||||||||| | || | |||||| |||||||||||||||| ||||| |||||||||| |||||||||    
T  7942553 catgtaaggaacattgtacaatttaatccaagactctttattaccatactccttcataatccaaacatc 7942485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 783775 - 783850
Alignment:
Q  213 gatctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    |||||| ||||||||||| |||  | ||||||||||| | || | ||||||||||||||||||||| |||||||||    
T  783775 gatctcccatgtaaggaacagtatacaatttagtccatggctttgtatttccatattccttcataatccaaacatc 783850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 288
Target Start/End: Complemental strand, 2502210 - 2502148
Alignment:
Q  226 aggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    |||||||||| | | |||||||||| |||| ||||||||||| |||||||||| |||||||||    
T  2502210 aggaatagtgtacagtttagtccaaaactccttatttccatactccttcataatccaaacatc 2502148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 12133151 - 12133097
Alignment:
Q  234 tgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    |||| ||||||||||| |||||| |||||||||| ||| ||||||||||||||||    
T  12133151 tgaacaatttagtccacgactctctatttccatactccctcataacccaaacatc 12133097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 44001655 - 44001605
Alignment:
Q  228 gaatagtgaaaaatttagtccaagactctttatttccatattccttcataa 278  Q
    |||||||| | | ||||||||||||||||||| ||||||||||||||||||    
T  44001655 gaatagtgtacagtttagtccaagactctttaattccatattccttcataa 44001605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 754611 - 754660
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    ||||||||||||||||||| || |||||| |||||||||| |||||||||    
T  754611 aatttagtccaagactcttgatctccatactccttcataatccaaacatc 754660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 1438044 - 1438003
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacc 280  Q
    |||||| ||||||| |||||||||||||||||||||||||||    
T  1438044 aatttaatccaagagtctttatttccatattccttcataacc 1438003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 9561987 - 9562036
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    ||||||||||||||||||| ||||||||| || ||||||| |||||||||    
T  9561987 aatttagtccaagactcttgatttccatactcattcataatccaaacatc 9562036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 23197079 - 23197014
Alignment:
Q  221 atgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaaca 286  Q
    ||||||||||||   || |||||||||||||| |||| |||||||||||||||||| | |||||||    
T  23197079 atgtaaggaatacgaaacaatttagtccaagattcttcatttccatattccttcatcagccaaaca 23197014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 2492131 - 2492083
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacat 287  Q
    ||||||||||||||||||  ||||||||| |||||||||| ||||||||    
T  2492131 aatttagtccaagactctcgatttccatactccttcataatccaaacat 2492083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 7427607 - 7427650
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataaccca 282  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||||    
T  7427607 aatttagcccacgactctttatttccatattccatcataaccca 7427650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 12218076 - 12218033
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataaccca 282  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||||    
T  12218076 aatttagcccacgactctttatttccatattccatcataaccca 12218033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 13479646 - 13479584
Alignment:
Q  220 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataaccca 282  Q
    ||||| || ||||||||| ||||| ||||||||||||| | |||||||||| ||||| |||||    
T  13479646 catgttagaaatagtgaacaattttgtccaagactcttgaattccatattctttcatgaccca 13479584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 746385 - 746422
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcat 276  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  746385 aatttagtccaagactcttgatttccatactccttcat 746422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 7430538 - 7430587
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    ||||||||| |||||| |||||||||||| | |||||||| |||||||||    
T  7430538 aatttagtctaagactttttatttccatacttcttcataatccaaacatc 7430587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 7442982 - 7443027
Alignment:
Q  242 ttagtccaagactctttatttccatattccttcataacccaaacat 287  Q
    |||||||||||||||| ||||||||| |||||||| | ||||||||    
T  7442982 ttagtccaagactcttgatttccatactccttcatgatccaaacat 7443027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 9565831 - 9565880
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    ||||||||||||||||||| || ||| || |||||||||| |||||||||    
T  9565831 aatttagtccaagactcttgatctccgtactccttcataatccaaacatc 9565880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 37757744 - 37757777
Alignment:
Q  245 gtccaagactctttatttccatattccttcataa 278  Q
    |||||||||||||| |||||||||||||||||||    
T  37757744 gtccaagactctttgtttccatattccttcataa 37757777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 768331 - 768379
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacat 287  Q
    ||||||||||||||||||| |||||| || || ||||||| ||||||||    
T  768331 aatttagtccaagactcttcatttccgtactcattcataatccaaacat 768379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 24 - 289
Target Start/End: Complemental strand, 11082077 - 11081812
Alignment:
Q  24 atagagaagatggtgatattaaactttcaccacagacttctggagtatatttaaagttaatagccttcaaggtactgctcctggggttgtaaagaaccaa 123  Q
    |||||||| | ||||||| |||||||||| |||||||||||||| ||| |||||| ||| |||||||||| |||| |||||| || |||||||||| |||    
T  11082077 atagagaacaaggtgatactaaactttcaacacagacttctggaatatctttaaaattattagccttcaaagtacggctcctaggattgtaaagaatcaa 11081978  T
Q  124 attcaagtcaatatcattcataaacttcagcaacacttgatcatcctcaaaagtatacaatgccttcgcaaaggccttaggtttagaaggatctctcatg 223  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||  |||| | |||||| | |||| | | | ||||||||||||||||||||    
T  11081977 attcaagtcaaaatcattcataaacttcaacaacacttgatcatcctcaaatatatatactgccttgggaaagacatcacgtttagaaggatctctcatg 11081878  T
Q  224 taaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    ||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11081877 taaggaatagtaaacaatttagtccaagactctttatttccatactccttcataacccaaacatca 11081812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 23766854 - 23766914
Alignment:
Q  229 aatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  23766854 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatca 23766914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 23816702 - 23816762
Alignment:
Q  229 aatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  23816702 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatca 23816762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 23769629 - 23769698
Alignment:
Q  220 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    |||| |||| |||||||| ||||||||||||||| ||||||| |||||||||||||||| ||||||||||    
T  23769629 catgaaaggtatagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatca 23769698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 23819477 - 23819546
Alignment:
Q  220 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    |||| |||| |||||||| ||||||||||||||| ||||||| |||||||||||||||| ||||||||||    
T  23819477 catgaaaggtatagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatca 23819546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 20293044 - 20292995
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatc 20292995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 23732230 - 23732166
Alignment:
Q  225 aaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    ||||||||||||| | |||| |||||||| ||||||| |||||||||||||||| ||||||||||    
T  23732230 aaggaatagtgaacagtttattccaagacgctttattcccatattccttcataatccaaacatca 23732166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 3181766 - 3181716
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    |||||| |||||||||||| |||||||||||||||||||| ||||||||||    
T  3181766 aatttaatccaagactcttcatttccatattccttcataagccaaacatca 3181716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 20301492 - 20301443
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    ||||||||||||||||||||| || ||||||||||||||| |||||||||    
T  20301492 aatttagtccaagactctttaattgcatattccttcataatccaaacatc 20301443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 20305905 - 20305856
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    ||||||||||||||||||||| |||||||||||||||||| ||| |||||    
T  20305905 aatttagtccaagactctttaattccatattccttcataatccagacatc 20305856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 20310309 - 20310260
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    ||||||||||||||||||||| |||||||||||||||||| ||| |||||    
T  20310309 aatttagtccaagactctttaattccatattccttcataatccagacatc 20310260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 23861009 - 23861078
Alignment:
Q  220 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    |||| ||||||||||||| ||||||||||||||| ||||  | |||||||||||||| | ||||||||||    
T  23861009 catgaaaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatca 23861078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 1427679 - 1427751
Alignment:
Q  223 gtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 295  Q
    ||||| ||| ||||| | |||| ||||||||||| |||||||||| || |||||||||||||||||| |||||    
T  1427679 gtaagaaattgtgaacagtttaatccaagactctgtatttccatactctttcataacccaaacatcatcacca 1427751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 41973474 - 41973522
Alignment:
Q  241 tttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  41973474 tttagtccatgacactttattttcatattccttcataacccaaacatca 41973522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 23764243 - 23764312
Alignment:
Q  220 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    |||| ||||||||||||| ||| ||||||||||| ||||  | |||||||||||||| | ||||||||||    
T  23764243 catgaaaggaatagtgaacaatgtagtccaagacgctttcatcccatattccttcattatccaaacatca 23764312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 23814076 - 23814145
Alignment:
Q  220 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    |||| ||||||||||||| ||||||||||||||| || |  | |||||||||||||| | ||||||||||    
T  23814076 catgaaaggaatagtgaacaatttagtccaagacgctgtcatcccatattccttcattatccaaacatca 23814145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 6401768 - 6401817
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    ||||||||||| |||||| ||||| || |||||||||||| |||||||||    
T  6401768 aatttagtccatgactctctattttcaaattccttcataagccaaacatc 6401817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 89211 - 89141
Alignment:
Q  220 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaa 290  Q
    ||||||||||| | || | |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  89211 catgtaaggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaatatcaa 89141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 39299045 - 39298975
Alignment:
Q  220 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaa 290  Q
    ||||||||||| | || ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  39299045 catgtaaggaacactgtaaaatttagtccaggactctttatttccacattccttcaaaacccaaacatcaa 39298975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 211 - 288
Target Start/End: Original strand, 1078134 - 1078211
Alignment:
Q  211 aggatctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    |||||||| | |||||| || | |||| ||||||||||| |||||| |||||||||| ||||||||||||||||||||    
T  1078134 aggatctcccctgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaacatc 1078211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 1421171 - 1421221
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    |||||| ||||||||||||||||||| ||||||||||||| ||||||||||    
T  1421171 aatttaatccaagactctttatttccgtattccttcataagccaaacatca 1421221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 3927108 - 3927063
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaa 284  Q
    |||||||||||||| | |||||||||||| ||||||||||||||||    
T  3927108 aatttagtccaagaatttttatttccataatccttcataacccaaa 3927063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 22672110 - 22672175
Alignment:
Q  220 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaac 285  Q
    |||||||| ||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||    
T  22672110 catgtaagaaatagtgaacaatttagtccaagattccttatttccatattccttcattacccaaac 22672175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 20019746 - 20019824
Alignment:
Q  211 aggatctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    |||||||  ||||| || || |||||| ||||||||||||||||||| | |||||||||||||||| ||||||||||||    
T  20019746 aggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatca 20019824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 11032959 - 11032910
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    |||||| ||||||||||||||||||| ||||||||||| | |||||||||    
T  11032959 aatttaatccaagactctttatttccgtattccttcatgagccaaacatc 11032910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 20016180 - 20016224
Alignment:
Q  232 agtgaaaaatttagtccaagactctttatttccatattccttcat 276  Q
    |||||| ||||||||||||||||||| | ||||||||||||||||    
T  20016180 agtgaacaatttagtccaagactcttgaattccatattccttcat 20016224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 55419843 - 55419792
Alignment:
Q  227 ggaatagtgaaaaatttagtccaagactctttatttccatattccttcataa 278  Q
    |||||||| || |||||||||||||| ||||||||||||||  |||||||||    
T  55419843 ggaatagtaaacaatttagtccaagaatctttatttccataaaccttcataa 55419792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 51381438 - 51381507
Alignment:
Q  220 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    ||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||||| ||||| ||||    
T  51381438 catgtaaggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatca 51381507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 23896138 - 23896190
Alignment:
Q  238 aaatttagtccaagactctttatttccatattccttcataacccaaacatcaa 290  Q
    |||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  23896138 aaatttaacccaagactctttatttccatattccttcataagccaaacatcaa 23896190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 24629213 - 24629262
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    |||||| ||||||||||||||||||| ||||||||||||| |||||||||    
T  24629213 aatttaatccaagactctttatttccgtattccttcataagccaaacatc 24629262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 289
Target Start/End: Original strand, 24246506 - 24246549
Alignment:
Q  246 tccaagactctttatttccatattccttcataacccaaacatca 289  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||    
T  24246506 tccaagactctttatttccgtattctttcataagccaaacatca 24246549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 25478914 - 25478863
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatcaa 290  Q
    |||||| ||||||| |||||||| || ||||||||||||| |||||||||||    
T  25478914 aatttaatccaagattctttattaccgtattccttcataagccaaacatcaa 25478863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 24242859 - 24242909
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    |||||| ||||||||||||||||||| |||  |||||||| ||||||||||    
T  24242859 aatttaatccaagactctttatttccgtatatcttcataagccaaacatca 24242909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 51782848 - 51782798
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    |||||| ||||||| | || |||||||||||||||||||| ||||||||||    
T  51782848 aatttattccaagattgttcatttccatattccttcataatccaaacatca 51782798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 51858655 - 51858605
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    |||||||||||||| |||  |||||||||||||||||| | ||||||||||    
T  51858655 aatttagtccaagattctacatttccatattccttcatgatccaaacatca 51858605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 24634817 - 24634857
Alignment:
Q  249 aagactctttatttccatattccttcataacccaaacatca 289  Q
    ||||||||||| |||| ||||||||||||| ||||||||||    
T  24634817 aagactctttaattccgtattccttcataagccaaacatca 24634857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 19727948 - 19727874
Alignment:
Q  221 atgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 295  Q
    ||||||| ||||||||| | ||||||||| |||||||||||| |||||||  ||||||||||||||||| |||||    
T  19727948 atgtaagaaatagtgaacagtttagtccatgactctttatttgcatattctgtcataacccaaacatcatcacca 19727874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 36577415 - 36577366
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  36577415 aatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 33026702 - 33026657
Alignment:
Q  243 tagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||    
T  33026702 tagtccaagactttttatttccatattgcttcataacccaaacatc 33026657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 7160730 - 7160805
Alignment:
Q  213 gatctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    ||||| |||||| ||||| |  ||| |||||||||||||| || ||||||||||| |||||||||| |||||||||    
T  7160730 gatctttcatgtgaggaagacggaacaatttagtccaagaatcattatttccatactccttcataagccaaacatc 7160805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 7168667 - 7168738
Alignment:
Q  214 atctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaac 285  Q
    ||||| |||||||||||    ||| |||||||||||||| || |||||||||||||||||||||| ||||||    
T  7168667 atctcccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 7168738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 290
Target Start/End: Complemental strand, 33038205 - 33038158
Alignment:
Q  243 tagtccaagactctttatttccatattccttcataacccaaacatcaa 290  Q
    |||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  33038205 tagtccaagactttttgtttccatattccttcataatccaaacatcaa 33038158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 7156169 - 7156243
Alignment:
Q  214 atctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    ||||| ||||||||||| |  ||| ||||||| |||||| |||| ||||||||| |||||||||| |||||||||    
T  7156169 atctcccatgtaaggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaacatc 7156243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 6538888 - 6538844
Alignment:
Q  234 tgaaaaatttagtccaagactctttatttccatattccttcataa 278  Q
    |||| |||||||||||||| |||||||||||||| ||||||||||    
T  6538888 tgaacaatttagtccaagaatctttatttccatactccttcataa 6538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 7174356 - 7174424
Alignment:
Q  220 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    ||||||||||| |  ||| ||| |||||||||| |||| |||||||||||||||||||| ||| |||||    
T  7174356 catgtaaggaacacggaacaatctagtccaagaatcttgatttccatattccttcataagccagacatc 7174424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 33020358 - 33020314
Alignment:
Q  243 tagtccaagactctttatttccatattccttcataacccaaacat 287  Q
    |||||||||||| ||||||||||||||||||||||| ||| ||||    
T  33020358 tagtccaagactttttatttccatattccttcataatccacacat 33020314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 34570471 - 34570520
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatc 288  Q
    ||||||||  || ||| ||||||||||||||||| |||||||||||||||    
T  34570471 aatttagttgaatactttttatttccatattcctccataacccaaacatc 34570520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 32331 - 32382
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatcaa 290  Q
    |||||| ||||||| ||||||||||||||||||||||||| |||||||||||    
T  32331 aatttaatccaagagtctttatttccatattccttcataagccaaacatcaa 32382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 40383 - 40433
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    |||||| ||||||| ||||||||| ||||||||||||||| ||||||||||    
T  40383 aatttaatccaagagtctttattttcatattccttcataagccaaacatca 40433  T

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Target: scaffold0200 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 782 - 830
Alignment:
Q  241 tttagtccaagactctttatttccatattccttcataacccaaacatca 289  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  782 tttagtccatgacactttattttcatattccttcataacccaaacatca 830  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 370777 - 370833
Alignment:
Q  229 aatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaac 285  Q
    |||| |||| |||||||||||||| |||||||||||||| | |||||||||||||||    
T  370777 aatattgaacaatttagtccaagaatctttatttccataattcttcataacccaaac 370833  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 24417488 - 24417536
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaacat 287  Q
    |||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  24417488 aatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 1442098 - 1442153
Alignment:
Q  227 ggaatagtgaaaaatttagtccaagactctttatttccatattccttcataaccca 282  Q
    |||| |||||| |||||||||||||| |||||| ||||||| ||||||||||||||    
T  1442098 ggaacagtgaacaatttagtccaagaatctttaattccataatccttcataaccca 1442153  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 19119112 - 19119065
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaaca 286  Q
    ||||||||||||||||||| |||||||||||||||||| | |||||||    
T  19119112 aatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19119065  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 19126406 - 19126359
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaaca 286  Q
    ||||||||||||||||||| |||||||||||||||||| | |||||||    
T  19126406 aatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19126359  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 9819830 - 9819876
Alignment:
Q  238 aaatttagtccaagactctttatttccatattccttcataacccaaa 284  Q
    ||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  9819830 aaatttagtccaagagtctctatttccatattccttcataagccaaa 9819876  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 176395 - 176345
Alignment:
Q  227 ggaatagtgaaaaatttagtccaagactctttatttccatattccttcata 277  Q
    |||| |||||| |||||||||||||| |||||||||||||| || ||||||    
T  176395 ggaagagtgaacaatttagtccaagaatctttatttccataatcattcata 176345  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 7564748 - 7564798
Alignment:
Q  234 tgaaaaatttagtccaagactctttatttccatattccttcataacccaaa 284  Q
    |||| |||||||||||||| || || |||||||| ||||||||||||||||    
T  7564748 tgaacaatttagtccaagaatccttgtttccataatccttcataacccaaa 7564798  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 9825516 - 9825562
Alignment:
Q  238 aaatttagtccaagactctttatttccatattccttcataacccaaa 284  Q
    ||||||||||||||| | | ||||||||||||||||||||| |||||    
T  9825516 aaatttagtccaagagtttctatttccatattccttcataagccaaa 9825562  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 1459543 - 1459588
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaa 284  Q
    |||||||||||||| |||||||||||| | || |||||||||||||    
T  1459543 aatttagtccaagattctttatttccaaaatctttcataacccaaa 1459588  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 1470925 - 1470970
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaa 284  Q
    ||||||| |||||| |||||||||||||| || |||||||||||||    
T  1470925 aatttagaccaagaatctttatttccataatctttcataacccaaa 1470970  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 9703888 - 9703933
Alignment:
Q  239 aatttagtccaagactctttatttccatattccttcataacccaaa 284  Q
    |||||||||||| | ||| ||||||||||||||||||||| |||||    
T  9703888 aatttagtccaaaaatctctatttccatattccttcataagccaaa 9703933  T

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Target: scaffold1004 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 2191 - 2144
Alignment:
Q  240 atttagtccaagactctttatttccatattccttcataacccaaacat 287  Q
    |||||||||||||||||  ||||||||||||||||||| |||||||||    
T  2191 atttagtccaagactctacatttccatattccttcatagcccaaacat 2144  T

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Target: scaffold0760 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 4686 - 4639
Alignment:
Q  240 atttagtccaagactctttatttccatattccttcataacccaaacat 287  Q
    |||||||||||||||||  ||||||||||||||||||| |||||||||    
T  4686 atttagtccaagactctacatttccatattccttcatagcccaaacat 4639  T

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