View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7427_low_26 (Length: 250)
Name: NF7427_low_26
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7427_low_26 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 2899788 - 2899549
Alignment:
| Q |
10 |
ggtgttaacaagaaagaactgttaaaggctaacttctcaagagaatatttgcttatgaaaaggaattcctttgtttacatcttcaagatatgtcaggtaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2899788 |
ggtgttaacaagaaagaactgttaaaggctaacttctcaagagaatatttgcttatgaaaaggaattcctttgtttacatcttcaagatatgtcaggtaa |
2899689 |
T |
|
| Q |
110 |
attatagttctggttgctttacatgtataaatattttctcattttcaatactatatttaattgtatgaatattttgcatacatgcttttaacnnnnnnnn |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2899688 |
attatagttctggttgctttacatgtataaatattttttcattttcaatactatatttaattgtatgaatattttgcatacatgcttttaac-ttttttt |
2899590 |
T |
|
| Q |
210 |
nnaatattcttcctatgtttttagcttactctcatggcaac |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2899589 |
ttaatattcttcctatgtttttagcttactctcatggcaac |
2899549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 2884772 - 2884874
Alignment:
| Q |
10 |
ggtgttaacaagaaagaactgttaaaggctaacttctcaagagaatatttgcttatgaaaaggaattcctttgtttacatcttcaagatatgtcaggtaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2884772 |
ggtgttaacaagaaagaactgttaaaggctaacttctcaagagagtatttgcttatgaaaagaaattcctttgtttacatcttcaagatatgtcaggtaa |
2884871 |
T |
|
| Q |
110 |
att |
112 |
Q |
| |
|
||| |
|
|
| T |
2884872 |
att |
2884874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 2874903 - 2874992
Alignment:
| Q |
9 |
tggtgttaacaagaaagaactgttaaaggctaacttctcaagagaatatttgcttatgaaaaggaattcctttgtttacatcttcaagat |
98 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| |||||||||| | ||||||||||||||| ||||| || ||||| |||| ||||| |
|
|
| T |
2874903 |
tggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttttgcttatgaaaagaaattcattcatttacctctttaagat |
2874992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 44212976 - 44212911
Alignment:
| Q |
31 |
ttaaaggctaacttctcaagagaatatttgcttatgaaaaggaattcctttgtttacatcttcaag |
96 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
44212976 |
ttaaaggctaacttctcaagagagtatttgctcatgaaaaggaattcgtttgtttacatcttcaag |
44212911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 44225137 - 44225072
Alignment:
| Q |
31 |
ttaaaggctaacttctcaagagaatatttgcttatgaaaaggaattcctttgtttacatcttcaag |
96 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
44225137 |
ttaaaggctaacttctcaagagagtatttgctcatgaaaaggaattcgtttgtttacatcttcaag |
44225072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 44235951 - 44235886
Alignment:
| Q |
31 |
ttaaaggctaacttctcaagagaatatttgcttatgaaaaggaattcctttgtttacatcttcaag |
96 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
44235951 |
ttaaaggctaacttctcaagagagtatttgctcatgaaaagaaattcctttgtttacatcttcaag |
44235886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University