View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7427_low_29 (Length: 248)
Name: NF7427_low_29
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7427_low_29 |
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| [»] scaffold0928 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 5312990 - 5312776
Alignment:
| Q |
16 |
atacccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacattttcgcatacaatcctgcctctatctcatcccatggt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5312990 |
atacccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacatttccgcatacaatcctgcctctatctcatcccatggt |
5312891 |
T |
|
| Q |
116 |
cattattgatgactactaactaagcaggagttgaattgaagtaaccacactgtatctgtaacttctccatggacgacaaactcattggaattggtaattg |
215 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
5312890 |
cattattggtgactactaactaagcaggagttgaattgaagtaaccacactgtatctgtaacttctccatcgacgacaaactcattggaattagtaattc |
5312791 |
T |
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| Q |
216 |
gattagcagagattg |
230 |
Q |
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||||| ||||||||| |
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| T |
5312790 |
gattatcagagattg |
5312776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 54754313 - 54754099
Alignment:
| Q |
16 |
atacccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacattttcgcatacaatcctgcctctatctcatcccatggt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
54754313 |
atacccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacatttccgcatacaatcctgcctctatctcatcccatggt |
54754214 |
T |
|
| Q |
116 |
cattattgatgactactaactaagcaggagttgaattgaagtaaccacactgtatctgtaacttctccatggacgacaaactcattggaattggtaattg |
215 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
54754213 |
cattattggtgactactaactaagcaggagttgaattgaagtaaccacactgtatctgtaacttctccatcgacgacaaactcattggaattagtaattc |
54754114 |
T |
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| Q |
216 |
gattagcagagattg |
230 |
Q |
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||||| ||||||||| |
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| T |
54754113 |
gattatcagagattg |
54754099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 30 - 230
Target Start/End: Original strand, 29515845 - 29516045
Alignment:
| Q |
30 |
aattaacggttgatcttgattgaaaataataatgtaaacatgtatacattttcgcatacaatcctgcctctatctcatcccatggtcattattgatgact |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29515845 |
aattaacggttgatcttgattgaaaataataatgtaaacatgtatacatttccgcatacaatcctgcctctatctcatcccatggtcattattggtgact |
29515944 |
T |
|
| Q |
130 |
actaactaagcaggagttgaattgaagtaaccacactgtatctgtaacttctccatggacgacaaactcattggaattggtaattggattagcagagatt |
229 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
29515945 |
actaactaagtaggagttgaattgaagtaaccacactgtatctgtaacttctccatcgacgacaaactcattgaaattggtaattggattatcagagatt |
29516044 |
T |
|
| Q |
230 |
g |
230 |
Q |
| |
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| |
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| T |
29516045 |
g |
29516045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 53345027 - 53345107
Alignment:
| Q |
150 |
attgaagtaaccacactgtatctgtaacttctccatggacgacaaactcattggaattggtaattggattagcagagattg |
230 |
Q |
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| T |
53345027 |
attgaagtaaccacactgtatctgtaacttctccatcgacgacaaactcatcggaattggtaattggattatcagagattg |
53345107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 53344969 - 53345029
Alignment:
| Q |
19 |
cccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacatt |
79 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53344969 |
cccttagatataattaacggttgatcttgattgaaaataataatgtaaacatgtatacatt |
53345029 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 9147158 - 9147372
Alignment:
| Q |
16 |
atacccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacattttcgcatacaatcctgcctctatctcatcccatggt |
115 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9147158 |
atacccttagatttaattaacggttgatcttgattaaaaataataatgtaaacatgtatacatttccgcatacaatcctgcctctatctcatcccatggt |
9147257 |
T |
|
| Q |
116 |
cattattgatgactactaactaagcaggagttgaattgaagtaaccacactgtatctgtaacttctccatggacgacaaactcattggaattggtaattg |
215 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| |
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| T |
9147258 |
cattattggtgactactaactaagcaggagttgaattgaagtaaccacactgtatctctaacttctcgatcgacgacaaactcattggaattggtaattg |
9147357 |
T |
|
| Q |
216 |
gattagcagagattg |
230 |
Q |
| |
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||||| ||||||||| |
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| T |
9147358 |
gattatcagagattg |
9147372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0928 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0928
Description:
Target: scaffold0928; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 3258 - 3049
Alignment:
| Q |
16 |
atacccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacattttcgcatacaatcctgcctctatctcatcccatggt |
115 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3258 |
atacccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacatttccgcatacaatcctgcctctatctcatcccatggt |
3159 |
T |
|
| Q |
116 |
cattattgatgactactaactaagcaggagttgaattgaagtaaccacactgtatctgtaacttctccatggacgacaaactcattggaattggtaattg |
215 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3158 |
cattattggtgactactaactaagcaggagttgaattgaagta-----tctgtatctgtaacttctccatcgacgacaaactcattggaattggtaattg |
3064 |
T |
|
| Q |
216 |
gattagcagagattg |
230 |
Q |
| |
|
||||| ||||||||| |
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|
| T |
3063 |
gattatcagagattg |
3049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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