View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7427_low_3 (Length: 544)
Name: NF7427_low_3
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7427_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 28 - 525
Target Start/End: Original strand, 46935474 - 46935983
Alignment:
| Q |
28 |
tggcgagttgcatgtttggacccgcgccccaaaatatcaaatcactatgtagacttttatcatttgagttgtaattacaagataataagatgatacttcc |
127 |
Q |
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| T |
46935474 |
tggcgaattgcaggtccggacccgcgccccagaatatcaaatcactatgtagtcttttatcatttgagttgtaattacaggacaataggatgatacttct |
46935573 |
T |
|
| Q |
128 |
atgacatataatgaaagtccaactctcactttacaactaaatttgtgctatttaaatgatgatgacaataaaattaaatttagttttagagaaaaggctt |
227 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||| |||||||| ||||||||||||| ||||||||||| |
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| T |
46935574 |
atgacatataatgaaagtccaactctcactttacagataaatttgagctatgtaaatgacgatgaaaataaaataaaatttagttttatagaaaaggctt |
46935673 |
T |
|
| Q |
228 |
ctcaaccaacaaaattattcttatcagtactcttataaatgttgaatacagaatagattcaggagtcttcggcaaaagtaacagnnnnnnnnnnnctttt |
327 |
Q |
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|||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| |||| |
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| T |
46935674 |
ctcagtcaacgaaattattcttatcagtactcttctaaatgttgaatacagaataggttcaggagtcttctgcaaaagtaacagtttttttttttttttt |
46935773 |
T |
|
| Q |
328 |
------------gaagtaatttttaattcagaaacgcaatctggctttgccaatgaaaatccatctatcagtaccgattcagatttcggtcttcagttgg |
415 |
Q |
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|||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||| || |
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| T |
46935774 |
tttttttcttttgaagtaatttgtaattcagaaacgcaacctggctttgccagtgaaaatccatctatcaataccgatgtagatttcggccttcaaccgg |
46935873 |
T |
|
| Q |
416 |
aattcatggttcaaaagtcaggctttcagcctcccgtctcaccgattcaaacagcacagaggataggtacctctaaccaaagctagggaaaacaacctgc |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46935874 |
aattcatggttcaaaagtcaggctttcagcctcccgtctcaccgattcaaacagcacagaggataggtacctctcaccaaagctagggaaaacaacctgc |
46935973 |
T |
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| Q |
516 |
accatatcaa |
525 |
Q |
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|||||||||| |
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| T |
46935974 |
accatatcaa |
46935983 |
T |
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Back To:
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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 429 - 525
Target Start/End: Complemental strand, 865263 - 865167
Alignment:
| Q |
429 |
aaagtcaggctttcagcctcccgtctcaccgattcaaacagcacagaggataggtacctctaaccaaagctagggaaaacaacctgcaccatatcaa |
525 |
Q |
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||||||| | ||||||| ||||||||||| || ||||| ||||||||||| |||||||||| |||||||| || ||||| ||||||||||| |||| |
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| T |
865263 |
aaagtcatggtttcagcttcccgtctcactgactcaaatagcacagaggacaggtacctctcgccaaagcttggaaaaacgacctgcaccatgtcaa |
865167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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