View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7427_low_34 (Length: 228)
Name: NF7427_low_34
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7427_low_34 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 34671912 - 34671685
Alignment:
| Q |
1 |
gcccactaagttctcgcacttgttcttcctcccaagcaaacaggcgcctacaccacttttgtgcctcaccattcactcctcaatcgaaagaatgcaaatt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34671912 |
gcccactaaattctcgcacttgttcttcctcccaagcaaacagacgcctacaccactttcgtgcctcaccattcactcctcaatcgaaagaatgcaaatt |
34671813 |
T |
|
| Q |
101 |
agccattgtcgtaattttgtactctaccaactcatataacttgttgaacctatcataaaatagagttccctccggccgaggtagaagaccaatttttcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
34671812 |
agccattgtcgtaattttgtactctaccaactcatataacttgttgcacctatcataaaatagagttccctccagccgaggtagaagaccaattttccac |
34671713 |
T |
|
| Q |
201 |
cggacgcctaatactatcaaccaatcaa |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
34671712 |
cggacgcctaatactatcaaccaatcaa |
34671685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University