View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7427_low_37 (Length: 222)

Name: NF7427_low_37
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7427_low_37
NF7427_low_37
[»] chr1 (11 HSPs)
chr1 (47-207)||(49608047-49608209)
chr1 (47-111)||(49613316-49613380)
chr1 (18-47)||(3611134-3611163)
chr1 (18-47)||(26472323-26472352)
chr1 (18-47)||(29770668-29770697)
chr1 (18-47)||(42234838-42234867)
chr1 (18-47)||(51057069-51057098)
chr1 (18-50)||(3285397-3285429)
chr1 (18-50)||(4243634-4243666)
chr1 (18-46)||(41467776-41467804)
chr1 (18-50)||(45538148-45538180)
[»] chr5 (7 HSPs)
chr5 (18-55)||(13957660-13957697)
chr5 (18-51)||(3466836-3466869)
chr5 (18-47)||(27503377-27503406)
chr5 (18-51)||(35626032-35626065)
chr5 (18-47)||(42247926-42247955)
chr5 (18-46)||(9424736-9424764)
chr5 (18-46)||(36365589-36365617)
[»] chr8 (8 HSPs)
chr8 (18-50)||(2379135-2379167)
chr8 (18-47)||(27243283-27243312)
chr8 (18-47)||(27254858-27254887)
chr8 (18-46)||(9713688-9713716)
chr8 (18-50)||(22878386-22878418)
chr8 (18-46)||(31940314-31940342)
chr8 (18-50)||(41862215-41862247)
chr8 (18-50)||(45236720-45236752)
[»] chr7 (17 HSPs)
chr7 (18-50)||(24228537-24228569)
chr7 (18-52)||(26579872-26579906)
chr7 (18-48)||(32556750-32556780)
chr7 (18-48)||(44659842-44659872)
chr7 (18-47)||(25037652-25037681)
chr7 (18-47)||(25894072-25894101)
chr7 (18-47)||(36816989-36817018)
chr7 (18-47)||(46817565-46817594)
chr7 (19-47)||(5712167-5712195)
chr7 (18-46)||(24923168-24923196)
chr7 (18-46)||(29610635-29610663)
chr7 (18-50)||(33423430-33423462)
chr7 (18-46)||(35752178-35752206)
chr7 (18-46)||(39323616-39323644)
chr7 (18-50)||(45482654-45482686)
chr7 (18-46)||(47906903-47906931)
chr7 (18-46)||(48085858-48085886)
[»] chr4 (9 HSPs)
chr4 (18-53)||(54216305-54216340)
chr4 (18-47)||(11972273-11972302)
chr4 (18-47)||(37239234-37239263)
chr4 (18-46)||(15060433-15060461)
chr4 (18-46)||(27873692-27873720)
chr4 (18-46)||(33289702-33289730)
chr4 (18-46)||(34552318-34552346)
chr4 (18-46)||(36532975-36533003)
chr4 (18-50)||(49881218-49881250)
[»] chr3 (13 HSPs)
chr3 (18-49)||(25641642-25641673)
chr3 (18-48)||(28048547-28048577)
chr3 (18-52)||(47809752-47809786)
chr3 (18-47)||(34279865-34279894)
chr3 (18-47)||(37324539-37324568)
chr3 (18-51)||(42291836-42291869)
chr3 (18-47)||(51224181-51224210)
chr3 (18-47)||(51415967-51415996)
chr3 (18-47)||(54707364-54707393)
chr3 (18-46)||(20754548-20754576)
chr3 (18-50)||(22399092-22399124)
chr3 (18-46)||(41635944-41635972)
chr3 (18-46)||(42589829-42589857)
[»] chr6 (3 HSPs)
chr6 (18-47)||(13329379-13329408)
chr6 (18-47)||(28948989-28949018)
chr6 (18-54)||(599883-599919)
[»] chr2 (10 HSPs)
chr2 (18-47)||(2000481-2000510)
chr2 (18-47)||(2688873-2688902)
chr2 (18-47)||(12333639-12333668)
chr2 (18-47)||(40544220-40544249)
chr2 (18-54)||(8056616-8056652)
chr2 (18-46)||(12730059-12730087)
chr2 (18-54)||(13815373-13815409)
chr2 (18-46)||(28641436-28641464)
chr2 (18-46)||(40635216-40635244)
chr2 (18-46)||(43356097-43356125)
[»] scaffold0721 (1 HSPs)
scaffold0721 (18-46)||(7089-7117)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 47 - 207
Target Start/End: Complemental strand, 49608209 - 49608047
Alignment:
Q  47 taaatataagcaattggattttgcttatagttaagaccaacaattttgatgttatttttgcttgtatat--gagacacgagaaagacatgagaaagtatt 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||| |||||||    
T  49608209 taaatataagcaattggattttgcttatagttaagaccaacaattttgatgttatttttgcttgtatatatgagtcacgagaaagacatgagcaagtatt 49608110  T
Q  145 gataattgaatttagcttatatttaagaccaacaattttgatgtttttgttttgtatgcgtgt 207  Q
    | ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  49608109 ggtaattgaatttagcttatattcaagaccaacaattttgatgtttttgttttgtgtgcgtgt 49608047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 49613380 - 49613316
Alignment:
Q  47 taaatataagcaattggattttgcttatagttaagaccaacaattttgatgttatttttgcttgt 111  Q
    |||||||||||||  |||||||||||||||||||||||||||||||| || || || ||||||||    
T  49613380 taaatataagcaagaggattttgcttatagttaagaccaacaatttttatctttttgttgcttgt 49613316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 3611163 - 3611134
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  3611163 cattcttcaaaggtaatttagaaaaaacct 3611134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 26472323 - 26472352
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  26472323 cattcttcaaaggtaatttagaaaaaacct 26472352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 29770697 - 29770668
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  29770697 cattcttcaaaggtaatttagaaaaaacct 29770668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 42234867 - 42234838
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  42234867 cattcttcaaaggtaatttagaaaaaacct 42234838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 51057098 - 51057069
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  51057098 cattcttcaaaggtaatttagaaaaaacct 51057069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 3285429 - 3285397
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaa 50  Q
    ||||||||||||||||| |||||||||||||||    
T  3285429 cattcttcaaaggtaatctagaaaaaacctaaa 3285397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 4243634 - 4243666
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaa 50  Q
    |||| ||||||||||||||||||||||||||||    
T  4243634 cattattcaaaggtaatttagaaaaaacctaaa 4243666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 41467776 - 41467804
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  41467776 cattcttcaaaggtaatttagaaaaaacc 41467804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 45538180 - 45538148
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaa 50  Q
    ||||||||||||||||| |||||||||||||||    
T  45538180 cattcttcaaaggtaatctagaaaaaacctaaa 45538148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 13957697 - 13957660
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaatataa 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13957697 cattcttcaaaggtaatttagaaaaaacctaaatataa 13957660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 3466836 - 3466869
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaat 51  Q
    ||||||||||||||||| ||||||||||||||||    
T  3466836 cattcttcaaaggtaatctagaaaaaacctaaat 3466869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 27503406 - 27503377
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  27503406 cattcttcaaaggtaatttagaaaaaacct 27503377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 35626065 - 35626032
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaat 51  Q
    ||||||||||||||||||||||||||||| ||||    
T  35626065 cattcttcaaaggtaatttagaaaaaaccaaaat 35626032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 42247926 - 42247955
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  42247926 cattcttcaaaggtaatttagaaaaaacct 42247955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 9424736 - 9424764
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  9424736 cattcttcaaaggtaatttagaaaaaacc 9424764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 36365589 - 36365617
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  36365589 cattcttcaaaggtaatttagaaaaaacc 36365617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 2379167 - 2379135
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaa 50  Q
    |||||||||||||||||||||||||||||||||    
T  2379167 cattcttcaaaggtaatttagaaaaaacctaaa 2379135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 27243283 - 27243312
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  27243283 cattcttcaaaggtaatttagaaaaaacct 27243312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 27254858 - 27254887
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  27254858 cattcttcaaaggtaatttagaaaaaacct 27254887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 9713716 - 9713688
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  9713716 cattcttcaaaggtaatttagaaaaaacc 9713688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 22878418 - 22878386
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaa 50  Q
    ||||||||||||||||| |||||||||||||||    
T  22878418 cattcttcaaaggtaatctagaaaaaacctaaa 22878386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 31940342 - 31940314
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  31940342 cattcttcaaaggtaatttagaaaaaacc 31940314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 41862247 - 41862215
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaa 50  Q
    ||||||||||||||||| |||||||||||||||    
T  41862247 cattcttcaaaggtaatctagaaaaaacctaaa 41862215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 45236720 - 45236752
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaa 50  Q
    ||||||||||||||||| |||||||||||||||    
T  45236720 cattcttcaaaggtaatctagaaaaaacctaaa 45236752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 24228569 - 24228537
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaa 50  Q
    |||||||||||||||||||||||||||||||||    
T  24228569 cattcttcaaaggtaatttagaaaaaacctaaa 24228537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 26579872 - 26579906
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaata 52  Q
    ||||||||||||||||||||||||||||| |||||    
T  26579872 cattcttcaaaggtaatttagaaaaaaccaaaata 26579906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 32556750 - 32556780
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaaccta 48  Q
    |||||||||||||||||||||||||||||||    
T  32556750 cattcttcaaaggtaatttagaaaaaaccta 32556780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 44659872 - 44659842
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaaccta 48  Q
    |||||||||||||||||||||||||||||||    
T  44659872 cattcttcaaaggtaatttagaaaaaaccta 44659842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 25037652 - 25037681
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  25037652 cattcttcaaaggtaatttagaaaaaacct 25037681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 25894072 - 25894101
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  25894072 cattcttcaaaggtaatttagaaaaaacct 25894101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 36816989 - 36817018
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  36816989 cattcttcaaaggtaatttagaaaaaacct 36817018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 46817565 - 46817594
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  46817565 cattcttcaaaggtaatttagaaaaaacct 46817594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 5712195 - 5712167
Alignment:
Q  19 attcttcaaaggtaatttagaaaaaacct 47  Q
    |||||||||||||||||||||||||||||    
T  5712195 attcttcaaaggtaatttagaaaaaacct 5712167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 24923168 - 24923196
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  24923168 cattcttcaaaggtaatttagaaaaaacc 24923196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 29610663 - 29610635
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  29610663 cattcttcaaaggtaatttagaaaaaacc 29610635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 33423430 - 33423462
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaa 50  Q
    ||||||||||||||||| |||||||||||||||    
T  33423430 cattcttcaaaggtaatctagaaaaaacctaaa 33423462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 35752178 - 35752206
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  35752178 cattcttcaaaggtaatttagaaaaaacc 35752206  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 39323644 - 39323616
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  39323644 cattcttcaaaggtaatttagaaaaaacc 39323616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 45482686 - 45482654
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaa 50  Q
    ||||||||||||||||| |||||||||||||||    
T  45482686 cattcttcaaaggtaatctagaaaaaacctaaa 45482654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 47906903 - 47906931
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  47906903 cattcttcaaaggtaatttagaaaaaacc 47906931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 48085886 - 48085858
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  48085886 cattcttcaaaggtaatttagaaaaaacc 48085858  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 54216340 - 54216305
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaatat 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  54216340 cattcttcaaaggtaatttagaaaaaaccttaatat 54216305  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 11972273 - 11972302
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  11972273 cattcttcaaaggtaatttagaaaaaacct 11972302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 37239234 - 37239263
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  37239234 cattcttcaaaggtaatttagaaaaaacct 37239263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 15060433 - 15060461
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  15060433 cattcttcaaaggtaatttagaaaaaacc 15060461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 27873692 - 27873720
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  27873692 cattcttcaaaggtaatttagaaaaaacc 27873720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 33289730 - 33289702
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  33289730 cattcttcaaaggtaatttagaaaaaacc 33289702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 34552346 - 34552318
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  34552346 cattcttcaaaggtaatttagaaaaaacc 34552318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 36532975 - 36533003
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  36532975 cattcttcaaaggtaatttagaaaaaacc 36533003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 49881218 - 49881250
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaa 50  Q
    ||||||||||||||||| |||||||||||||||    
T  49881218 cattcttcaaaggtaatctagaaaaaacctaaa 49881250  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 25641673 - 25641642
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaa 49  Q
    ||||||||||||||||||||||||||||||||    
T  25641673 cattcttcaaaggtaatttagaaaaaacctaa 25641642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 28048547 - 28048577
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaaccta 48  Q
    |||||||||||||||||||||||||||||||    
T  28048547 cattcttcaaaggtaatttagaaaaaaccta 28048577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 47809752 - 47809786
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaata 52  Q
    ||||||||||||||||||||||||||||| |||||    
T  47809752 cattcttcaaaggtaatttagaaaaaaccaaaata 47809786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 34279865 - 34279894
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  34279865 cattcttcaaaggtaatttagaaaaaacct 34279894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 37324568 - 37324539
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  37324568 cattcttcaaaggtaatttagaaaaaacct 37324539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 42291869 - 42291836
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaat 51  Q
    ||||||||||||||||| ||||||||||||||||    
T  42291869 cattcttcaaaggtaatctagaaaaaacctaaat 42291836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 51224181 - 51224210
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  51224181 cattcttcaaaggtaatttagaaaaaacct 51224210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 51415996 - 51415967
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  51415996 cattcttcaaaggtaatttagaaaaaacct 51415967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 54707364 - 54707393
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  54707364 cattcttcaaaggtaatttagaaaaaacct 54707393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 20754548 - 20754576
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  20754548 cattcttcaaaggtaatttagaaaaaacc 20754576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 22399124 - 22399092
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaa 50  Q
    ||||||||||||||||| |||||||||||||||    
T  22399124 cattcttcaaaggtaatctagaaaaaacctaaa 22399092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 41635944 - 41635972
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  41635944 cattcttcaaaggtaatttagaaaaaacc 41635972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 42589857 - 42589829
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  42589857 cattcttcaaaggtaatttagaaaaaacc 42589829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 13329408 - 13329379
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  13329408 cattcttcaaaggtaatttagaaaaaacct 13329379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 28948989 - 28949018
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  28948989 cattcttcaaaggtaatttagaaaaaacct 28949018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 599919 - 599883
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaatata 54  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  599919 cattcttcaaaggtaatctagaaaaaacctacatata 599883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 2000481 - 2000510
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  2000481 cattcttcaaaggtaatttagaaaaaacct 2000510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 2688873 - 2688902
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  2688873 cattcttcaaaggtaatttagaaaaaacct 2688902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 12333639 - 12333668
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  12333639 cattcttcaaaggtaatttagaaaaaacct 12333668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 40544220 - 40544249
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacct 47  Q
    ||||||||||||||||||||||||||||||    
T  40544220 cattcttcaaaggtaatttagaaaaaacct 40544249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 8056652 - 8056616
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaatata 54  Q
    |||||||||||||||||||||||||||| || |||||    
T  8056652 cattcttcaaaggtaatttagaaaaaacttatatata 8056616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 12730087 - 12730059
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  12730087 cattcttcaaaggtaatttagaaaaaacc 12730059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 13815373 - 13815409
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacctaaatata 54  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  13815373 cattcttcaaaggtaatctagaaaaaacctatatata 13815409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 28641436 - 28641464
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  28641436 cattcttcaaaggtaatttagaaaaaacc 28641464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 40635244 - 40635216
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  40635244 cattcttcaaaggtaatttagaaaaaacc 40635216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 43356125 - 43356097
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  43356125 cattcttcaaaggtaatttagaaaaaacc 43356097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0721 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0721
Description:

Target: scaffold0721; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 7117 - 7089
Alignment:
Q  18 cattcttcaaaggtaatttagaaaaaacc 46  Q
    |||||||||||||||||||||||||||||    
T  7117 cattcttcaaaggtaatttagaaaaaacc 7089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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