View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7428_high_1 (Length: 897)
Name: NF7428_high_1
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7428_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 597; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 11 - 739
Target Start/End: Complemental strand, 5084018 - 5083290
Alignment:
| Q |
11 |
gatggacatcatggaagagtaaatgcattgaatcttagtaatatgtaccttgaaggtacaatttctcctcaattgggaaatctttctttccttgctgttc |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||| |||||||||| ||| |
|
|
| T |
5084018 |
gatgaacatcatggaagagtaaatgcattgaatcttagtaacatggaccttgaaggtacaatttcccctcaattgggaaatctctctttccttgtatttc |
5083919 |
T |
|
| Q |
111 |
ttgatctacatcgcaatagtttccatggtgagttaccacatgagttacttcagttgaagagattgaaatggttggatttgagtaacaatgattttgttgg |
210 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
5083918 |
ttgatctacaaggaaatagtttccatggtgagttaccacatgagttacttcagttgaagagattgaaattgttgaatttgagcaacaatgattttgttgg |
5083819 |
T |
|
| Q |
211 |
agaaattccttcaaggataggagagttatcaaaacttcaacacttggatcttggccataataatattgttggagctattcctcaatctatatccaacttg |
310 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| |||||| || | || || ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5083818 |
agaaattccttcaaggataggggacttatcaaaacttcaacaattggatattcggcaaaacaatattgttggagttattcctcaatctatatccaacttg |
5083719 |
T |
|
| Q |
311 |
tcaatgttagagtatctagattggaaatcaaatttcatcaaaggaaccattccacatgccattagtcaacttggtatgttgaggattttggatattagaa |
410 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5083718 |
tcaatgttagaatatctaaatttgaaatcaaatcacatcaaaggaaccattccacatgccattagtcaacttggtatgttgaggattttggatattagaa |
5083619 |
T |
|
| Q |
411 |
ataacaagctctctggaatcctaccaacaacaatttccaacatgtcttcacttgaagaaattcatttagcaaataactctttatctggtatgatatattc |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5083618 |
ataacaagctctctggaatcctaccaacaacaatatccaacatgtcttcacttgaagaaattcatttagcaaacaactctttatctggtatgatatattc |
5083519 |
T |
|
| Q |
511 |
acactattacatcataacatgcatgtgattgagtttaattaactttacttttgtggatacattgtcgcggctgcaccgtgtagcaaagtataaagtcgtt |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5083518 |
acactattacatcataacatgcatgtgattgagtttaattaactttacttttgtggatacattgtcgcggctgcaccgtgtagcaaagtataaagtcgtt |
5083419 |
T |
|
| Q |
611 |
ggatctaataaagaacaattcttattttctctctttttgatcgaacgactctacatcttaatgcatggtgtagctgctgtaacacaccatgtgaactatt |
710 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5083418 |
ggatctaataaagaaaaattcttattttctctctttttgatcgaacgactctacatcttaatgcatggtgtagctgctgtaacacactgtgtgaactatt |
5083319 |
T |
|
| Q |
711 |
catttatatcatgaagaaggatgggccac |
739 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5083318 |
catttatatcatgaagaaggatgggccac |
5083290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 11 - 505
Target Start/End: Original strand, 5111053 - 5111547
Alignment:
| Q |
11 |
gatggacatcatggaagagtaaatgcattgaatcttagtaatatgtaccttgaaggtacaatttctcctcaattgggaaatctttctttccttgctgttc |
110 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| |||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5111053 |
gatgaacatcatggaagagtgaatgcattggatcttaataacatggaccttgaaggtacaatttctcctcaattgggaaatctttctttccttgttgttc |
5111152 |
T |
|
| Q |
111 |
ttgatctacatcgcaatagtttccatggtgagttaccacatgagttacttcagttgaagagattgaaatggttggatttgagtaacaatgattttgttgg |
210 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5111153 |
ttgatttacaaggcaatagtttctatggtgagttaccacatgagttacttcagttgaagagattgaaatggttggatttgagtgacaatgattttgttgg |
5111252 |
T |
|
| Q |
211 |
agaaattccttcaaggataggagagttatcaaaacttcaacacttggatcttggccataataatattgttggagctattcctcaatctatatccaacttg |
310 |
Q |
| |
|
||||||||||||||||||||| || ||| |||||||||| || ||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5111253 |
agaaattccttcaaggataggggacttagcaaaacttcatcatttggatctttactttaataattttgttggagctattcctcaatctatatccgacttg |
5111352 |
T |
|
| Q |
311 |
tcaatgttagagtatctagattggaaatcaaatttcatcaaaggaaccattccacatgccattagtcaacttggtatgttgaggattttggatattagaa |
410 |
Q |
| |
|
||||||||| ||| ||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5111353 |
tcaatgttacggtacctagatttgagtacaaatttcatcaaaggaaccattccacatgccattggtcaacttggtatgttgaggattttggatattagaa |
5111452 |
T |
|
| Q |
411 |
ataacaagctctctggaatcctaccaacaacaatttccaacatgtcttcacttgaagaaattcatttagcaaataactctttatctggtatgata |
505 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||| |
|
|
| T |
5111453 |
ataacaagctctgtggaatcctaccaacaacaatatccaacatgtcttcacttgaagaaattcatttagcaaataactccttatcgggtaagata |
5111547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 557
Target Start/End: Original strand, 5094050 - 5094587
Alignment:
| Q |
11 |
gatggacatcatggaagagtaaatgcattgaatcttagtaatatgtaccttgaaggtacaatttctcctcaattgggaaatctttctttccttgctgttc |
110 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5094050 |
gatgaacaccatggaagagtaaatgcattgaatcttagtagcatgggccttgaaggtacaatttctcctcaattgggaaatctttctttccttattgttc |
5094149 |
T |
|
| Q |
111 |
ttgatctacatcgcaatagtttccatggtgagttaccacatgagttacttcagttgaagagattgaaatggttggatttgagtaacaatgattttgttgg |
210 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| |||| || ||||||||||||||||| |
|
|
| T |
5094150 |
ttgatttacagggcaatagtttccatggtgagttaccacatgagttgcttcagttgaaaagattgaaattgttgaatttaagcaacaatgattttgttgg |
5094249 |
T |
|
| Q |
211 |
agaaattccttcaaggataggagagttatcaaaacttcaacacttggatcttggccataataatattgttggagctattcctcaatctatatccaacttg |
310 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||| || || |||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
5094250 |
agaaattccttcaaggataggggagttatcaaaacttcaacaattggatattagctataataatattgttggagttattcctcaatctatattcaacttg |
5094349 |
T |
|
| Q |
311 |
tcaatgttagagtatctagattggaaatcaaatttcatcaaaggaaccattccacatgccattagtcaacttggtatgttgaggattttggatattagaa |
410 |
Q |
| |
|
||||||||||| |||||| || || |||||||||||||||||||||||| ||| |||||||| || ||||||| |||| |||| | | |
|
|
| T |
5094350 |
tcaatgttagaatatctacgtttga----------catcaaaggaaccattccacatgcaattggtcaacttcgtcagttgaggtatttgagtattggta |
5094439 |
T |
|
| Q |
411 |
ataaca---agctctctggaatcctaccaacaacaatttccaacatgtcttcacttgaagaaattcatttagcaaataactctttatctggtatgatata |
507 |
Q |
| |
|
|||||| ||| |||||||| ||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||| ||||| ||||||||||| |
|
|
| T |
5094440 |
ataacaggttgctgtctggaatgataccaacaacaatttgcaacatgtcttcacttgaagtaatttatttagcaaataactccttatcaggtatgatata |
5094539 |
T |
|
| Q |
508 |
ttcacactattacatcataacatgcatgtgattgagtttaattaacttta |
557 |
Q |
| |
|
|||||| ||||||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
5094540 |
ctcacaccattacatgataacatgca--tgattgagtttttttaacttta |
5094587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 761 - 880
Target Start/End: Complemental strand, 5083293 - 5083174
Alignment:
| Q |
761 |
ccacctagtgcttattaaaagacatttattatttatatcatttttaatgtcttttctttgtctatgttgaactaaaggtgaaattcctaaaggaattggt |
860 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5083293 |
ccacctagtgcttattaaaagacatttattatttatatcatttttaatgtcttttctttgtctatgttgaactaaaggtgaaattcctaaaggaattggt |
5083194 |
T |
|
| Q |
861 |
gatcttacacaactgagaac |
880 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5083193 |
gatcttacacaactgagaac |
5083174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 825 - 876
Target Start/End: Original strand, 5111879 - 5111930
Alignment:
| Q |
825 |
tgttgaactaaaggtgaaattcctaaaggaattggtgatcttacacaactga |
876 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
5111879 |
tgttgaactaaaggagaaattccaaaaggaattggtgatcttacagaactga |
5111930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 827 - 872
Target Start/End: Original strand, 5095123 - 5095168
Alignment:
| Q |
827 |
ttgaactaaaggtgaaattcctaaaggaattggtgatcttacacaa |
872 |
Q |
| |
|
|||||||||||| |||||||| |||| ||||||||||||| ||||| |
|
|
| T |
5095123 |
ttgaactaaaggagaaattcccaaagaaattggtgatctttcacaa |
5095168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 3e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 14427800 - 14427589
Alignment:
| Q |
11 |
gatggacatcatggaagagtaaatgcattgaatcttagtaatatgtaccttgaaggtacaatttctcctcaattgggaaatctttctttccttgctgttc |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| |||||||| |||||||||| ||||| |
|
|
| T |
14427800 |
gatgaacatcatggaagagtaaatgcattgaatcttagtaacatgggccttgaaggtaacatttctcctcaattaggaaatctctctttccttgttgttc |
14427701 |
T |
|
| Q |
111 |
ttgatctacatcgcaatagtttccatggtgagttaccacatgagttacttcagttg---aagagattgaaatggttggatttgagtaacaatgattttgt |
207 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| || ||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
14427700 |
ttgatctacatggcaatagtttccatggtgagttaccacatgagttatttcaattgcataatagattgaaaatgttggatttgagcaacaatgattttgt |
14427601 |
T |
|
| Q |
208 |
tggagaaattcc |
219 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14427600 |
tggagaaattcc |
14427589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 840 - 878
Target Start/End: Complemental strand, 14427596 - 14427558
Alignment:
| Q |
840 |
gaaattcctaaaggaattggtgatcttacacaactgaga |
878 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14427596 |
gaaattccgaaaggaattggtgatcttacacaactgaga |
14427558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 3e-35; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 60 - 220
Target Start/End: Original strand, 16873359 - 16873519
Alignment:
| Q |
60 |
ttgaaggtacaatttctcctcaattgggaaatctttctttccttgctgttcttgatctacatcgcaatagtttccatggtgagttaccacatgagttact |
159 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||| | ||||||| ||||| |||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
16873359 |
ttgaaggtacaatttcctctcaattgggaaatctctctttccttgttattcttgacctacaaggcaatagtttccatggtgagtttccacaagagttact |
16873458 |
T |
|
| Q |
160 |
tcagttgaagagattgaaatggttggatttgagtaacaatgattttgttggagaaattcct |
220 |
Q |
| |
|
||| || ||||| |||| | || || ||||| |||||||||||||||||||||||||| |
|
|
| T |
16873459 |
tcatctgcagagactgaagagattagacttgagctacaatgattttgttggagaaattcct |
16873519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 806 - 871
Target Start/End: Original strand, 16874535 - 16874600
Alignment:
| Q |
806 |
aatgtcttttctttgtctatgttgaactaaaggtgaaattcctaaaggaattggtgatcttacaca |
871 |
Q |
| |
|
||||||||| | |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16874535 |
aatgtctttcatctgtctatgttgaacaaaaggtgaaattccaaaaggaattggtgatcttacaca |
16874600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 432 - 501
Target Start/End: Original strand, 16873583 - 16873652
Alignment:
| Q |
432 |
taccaacaacaatttccaacatgtcttcacttgaagaaattcatttagcaaataactctttatctggtat |
501 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||| | ||||| ||||| ||||| |
|
|
| T |
16873583 |
taccaacaacaatttccaacatgtctacacttgaagaaatccatttagctagaaactccttatcaggtat |
16873652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 16872502 - 16872553
Alignment:
| Q |
17 |
catcatggaagagtaaatgcattgaatcttagtaatatgtaccttgaaggta |
68 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
16872502 |
catcatggaagagtaaaggcattgaatcttagtaatatgggacttgaaggta |
16872553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 16873503 - 16873578
Alignment:
| Q |
276 |
ttgttggagctattcctcaatctatatccaacttgtcaatgttagagtatctagattggaaatcaaatttcatcaaagga |
355 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||| ||||||| | ||||||| ||||||||||| |
|
|
| T |
16873503 |
ttgttggagaaattcctcaatct----ccaacttgtcaatgttagagtacctagatttaagatcaaatctcatcaaagga |
16873578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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