View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7428_high_10 (Length: 515)

Name: NF7428_high_10
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7428_high_10
NF7428_high_10
[»] chr6 (11 HSPs)
chr6 (19-496)||(5692303-5692782)
chr6 (135-254)||(5356816-5356935)
chr6 (135-254)||(5423436-5423555)
chr6 (435-498)||(5276201-5276264)
chr6 (135-254)||(5069271-5069390)
chr6 (135-254)||(5105072-5105191)
chr6 (117-209)||(5134087-5134179)
chr6 (123-199)||(5174610-5174686)
chr6 (135-255)||(5341382-5341502)
chr6 (135-254)||(5368143-5368262)
chr6 (135-205)||(5149156-5149226)
[»] chr4 (6 HSPs)
chr4 (135-253)||(25567613-25567731)
chr4 (135-255)||(4342630-4342750)
chr4 (135-255)||(4333240-4333360)
chr4 (135-255)||(4135738-4135858)
chr4 (135-254)||(4323296-4323415)
chr4 (135-254)||(4358099-4358218)


Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 19 - 496
Target Start/End: Original strand, 5692303 - 5692782
Alignment:
Q  19 gtagggatgattgttggatgtctggcaggtgaagtatatcttcaaaatattcaaagtctatatcttctgaatattcaaagcctacatcttgctgtatttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5692303 gtagggatgattgttggatgtctggcaggtgaagtatatcttcaaaatattcaaagtctatatcttctgaatattcaaagcctacatcttgctgtatttc 5692402  T
Q  119 tttatctaacaattgcatcatatcttgcactcgaggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaactttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5692403 tttatctaacaattgcatcatatcttgcactcgaggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaactttt 5692502  T
Q  219 ttgacaatatcttttatagcctcactttcgttcctatttcaaaaacaaccaaaagagaggattaatgattggataagaa--annnnnnntcnnnnnnnat 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||       ||    
T  5692503 ttgacaatatcttttatagcctcactttcgttcctatttcaaaaacaaccaaaagagaggattaatgattggataagaacccccccccctctttttttat 5692602  T
Q  317 tgcaaaatggggcaaagttagaggacaaaaatgttgttttattaatcgggggcaaaattataattttaacaaatttagggaaccaaaaatgagtttaagc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5692603 tgcaaaatggggcaaagttagaggacaaaaatgttgttttattaatcgggggcaaaattataattttaacaaatttagggaaccaaaaatgagtttaagc 5692702  T
Q  417 ctctgaatgattgcaatagttgaatgaaactacctgaaatttggaactacaaagccagcaagcccagcaacctcactaag 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5692703 ctctgaatgattgcaatagttgaatgaaactacctgaaatttggaactacaaagccagcaagcccagcaacctcactaag 5692782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 5356816 - 5356935
Alignment:
Q  135 atcatatcttgcactcgaggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaatatctttta 234  Q
    |||||||||||||| |||| |||||||||||| | || |||||||||||| |||||| ||||||| ||||||||   ||  ||||| |||||||| || |    
T  5356816 atcatatcttgcacacgagattcaactcccaccggattattagcaacaaataagtctgtcttgtcaagcaaacgtgtaatatttttaacaatatccttga 5356915  T
Q  235 tagcctcactttcgttccta 254  Q
    |||| |||||||| ||||||    
T  5356916 tagcttcactttcattccta 5356935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 5423555 - 5423436
Alignment:
Q  135 atcatatcttgcactcgaggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaatatctttta 234  Q
    ||||||||||||||||||| |||||||||||| | || |||||||| |||||| ||| ||||||| |||  ||||  ||| ||||  |||||||| || |    
T  5423555 atcatatcttgcactcgagattcaactcccacaggattattagcaataaacaaatctgtcttgtcaagcttacgcgtaacattttcaacaatatccttaa 5423456  T
Q  235 tagcctcactttcgttccta 254  Q
    ||||||||||||| ||||||    
T  5423455 tagcctcactttcattccta 5423436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 435 - 498
Target Start/End: Complemental strand, 5276264 - 5276201
Alignment:
Q  435 gttgaatgaaactacctgaaatttggaactacaaagccagcaagcccagcaacctcactaagtg 498  Q
    ||||||| ||| ||||||||||||||||||||||||||||||| | |||||||||||| |||||    
T  5276264 gttgaattaaattacctgaaatttggaactacaaagccagcaatctcagcaacctcacgaagtg 5276201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 5069271 - 5069390
Alignment:
Q  135 atcatatcttgcactcgaggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaatatctttta 234  Q
    |||||||| |||||||||| |||||||||||||| || |||||||| ||||||||||  |||||| |||  ||||  ||| ||||  |||||||| | ||    
T  5069271 atcatatcctgcactcgagattcaactcccactggattattagcaataaacaagtctgccttgtcaagcttacgcgtaacattttcaacaatatcctcta 5069370  T
Q  235 tagcctcactttcgttccta 254  Q
    || | |||||||| ||||||    
T  5069371 taacatcactttcattccta 5069390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 5105072 - 5105191
Alignment:
Q  135 atcatatcttgcactcgaggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaatatctttta 234  Q
    ||||||||||| ||||||| |||||||||||| | || |||||||| |||||| ||| ||||||| |||||| ||   || || || |||||||| || |    
T  5105072 atcatatcttgaactcgagattcaactcccaccggattattagcaataaacaaatctgtcttgtcaagcaaatgcgttacattgttaacaatatccttga 5105171  T
Q  235 tagcctcactttcgttccta 254  Q
    || |||||||||| ||||||    
T  5105172 taacctcactttcattccta 5105191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 209
Target Start/End: Original strand, 5134087 - 5134179
Alignment:
Q  117 tctttatctaacaattgcatcatatcttgcactcgaggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgc 209  Q
    ||||| |||| |||||| ||||||||| |||  |||| |||||||||||||| || |||||||| |||||| ||| | ||||| |||||||||    
T  5134087 tctttgtctagcaattgaatcatatctagcatacgagattcaactcccactggattattagcaataaacaaatctattttgtcaagcaaacgc 5134179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 5174686 - 5174610
Alignment:
Q  123 tctaacaattgcatcatatcttgcactcgaggttcaactcccactgaatgattagcaacaaacaagtctttcttgtc 199  Q
    |||| |||||| ||||||||||||||||||| ||| | |||||| | || || |||||||||||||||| |||||||    
T  5174686 tctagcaattgaatcatatcttgcactcgagattcgagtcccaccggattatcagcaacaaacaagtctgtcttgtc 5174610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 255
Target Start/End: Complemental strand, 5341502 - 5341382
Alignment:
Q  135 atcatatcttgcactcgaggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaatatctttta 234  Q
    ||||||||||||| ||| | |||||| ||| ||| || || | |||||||||||||| ||||||  ||||| |||  |||||||| ||| ||||| || |    
T  5341502 atcatatcttgcaatcgggattcaacccccgctggattatcaacaacaaacaagtctgtcttgttaagcaagcgcgtaactttttcgacgatatccttga 5341403  T
Q  235 tagcctcactttcgttcctat 255  Q
    ||||||| ||||| |||||||    
T  5341402 tagcctcgctttcattcctat 5341382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 5368262 - 5368143
Alignment:
Q  135 atcatatcttgcactcgaggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaatatctttta 234  Q
    |||||| |||||||||||| |||||||||||||| || || ||||| |||||| ||| ||||||| |||  ||||  ||| ||||  |||||||| |  |    
T  5368262 atcataccttgcactcgagattcaactcccactggattatcagcaataaacaattctgtcttgtcaagcttacgcgtaacattttcaacaatatcctgga 5368163  T
Q  235 tagcctcactttcgttccta 254  Q
    |||||| |||||| ||||||    
T  5368162 tagccttactttcattccta 5368143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 5149156 - 5149226
Alignment:
Q  135 atcatatcttgcactcgaggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaa 205  Q
    ||||||||||| ||||||| ||||||||| |||| || || |||||| ||||||||  |||||||||||||    
T  5149156 atcatatcttgtactcgagtttcaactccgactggattatgagcaacgaacaagtcggtcttgtctagcaa 5149226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 135 - 253
Target Start/End: Complemental strand, 25567731 - 25567613
Alignment:
Q  135 atcatatcttgcactcgaggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaatatctttta 234  Q
    ||||||| || ||||||||||||||||||||||| || ||||||||||| ||||| | ||||||||||||||||||| | |||||  |||||||| || |    
T  25567731 atcatattttccactcgaggttcaactcccactggattattagcaacaagcaagtgtgtcttgtctagcaaacgcacgattttttcaacaatatccttga 25567632  T
Q  235 tagcctcactttcgttcct 253  Q
    ||||||||||||| |||||    
T  25567631 tagcctcactttcattcct 25567613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 135 - 255
Target Start/End: Complemental strand, 4342750 - 4342630
Alignment:
Q  135 atcatatcttgcactcgaggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaatatctttta 234  Q
    |||||||||||||||||||  || ||||| || | || || |||||  ||||||||| ||||||| |||||||| | ||| ||||  ||||||||||| |    
T  4342750 atcatatcttgcactcgagaatcgactccgaccggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttga 4342651  T
Q  235 tagcctcactttcgttcctat 255  Q
    || |||||||||| |||||||    
T  4342650 taacctcactttcattcctat 4342630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 255
Target Start/End: Complemental strand, 4333360 - 4333240
Alignment:
Q  135 atcatatcttgcactcgaggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaatatctttta 234  Q
    ||||||||||| ||||||| ||| ||||| || | ||||| |||||  ||||||||  ||||||| ||||||||  |||| ||||  |||||||| || |    
T  4333360 atcatatcttgtactcgagattcgactcctaccggatgatcagcaatgaacaagtcagtcttgtcaagcaaacgtgcaacattttcaacaatatccttga 4333261  T
Q  235 tagcctcactttcgttcctat 255  Q
    |  ||||||||||||||||||    
T  4333260 tgacctcactttcgttcctat 4333240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 255
Target Start/End: Original strand, 4135738 - 4135858
Alignment:
Q  135 atcatatcttgcactcgaggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaatatctttta 234  Q
    ||||||||| ||||||||| ||| ||||  |||| ||| | |||||  |||| |||| ||||||| |||||| |   ||||||||  |||||||| || |    
T  4135738 atcatatctagcactcgagattcgactctaactggatggtcagcaatgaacaggtctgtcttgtcaagcaaatgtgtaactttttcaacaatatccttga 4135837  T
Q  235 tagcctcactttcgttcctat 255  Q
    || ||||||||||||||||||    
T  4135838 tatcctcactttcgttcctat 4135858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 4323296 - 4323415
Alignment:
Q  135 atcatatcttgcactcgaggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaatatctttta 234  Q
    |||||||||||||||||||  || |  ||||| | || || |||||| ||||||||| ||||||| || |||||   ||| ||||  |||||||| || |    
T  4323296 atcatatcttgcactcgagaatcgatacccacaggattatcagcaacgaacaagtctgtcttgtccagtaaacgtgtaacattttcaacaatatccttga 4323395  T
Q  235 tagcctcactttcgttccta 254  Q
    || |||||||||||||||||    
T  4323396 taacctcactttcgttccta 4323415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 4358218 - 4358099
Alignment:
Q  135 atcatatcttgcactcgaggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaatatctttta 234  Q
    |||||||||||||||||||  || ||||| |||| || || |||||  ||||||||| ||||||| ||||||||   ||| ||||  ||||||||  | |    
T  4358218 atcatatcttgcactcgagaatcgactcctactggattatcagcaatgaacaagtctgtcttgtcaagcaaacgagtaacattttcaacaatatccctga 4358119  T
Q  235 tagcctcactttcgttccta 254  Q
    || |||||||||| ||||||    
T  4358118 taacctcactttcattccta 4358099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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