View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7428_high_14 (Length: 427)
Name: NF7428_high_14
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7428_high_14 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 53454579 - 53454153
Alignment:
| Q |
1 |
ttgttagttctattttttcagtctttggtgctttcttcgaagttgttcactttctttatgcattgttattcatttgttaattctccatttggatatccat |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53454579 |
ttgttggttctattttttcagtctttggtgctttcttcgaagttgttcactttctttatgcattgttattcatttgttaattctccatttggatatccat |
53454480 |
T |
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| Q |
101 |
aattgtgctatttgctataatactctgttagtttagcttatgttgtggaattccaggctgtccgtattggagatttggagctgtttaggaacattgcaga |
200 |
Q |
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| T |
53454479 |
aattgtgctatttgctataatactctgttagtttagcttatgttgtggaattccaggctgtccgtattggagatttggagctgtttaggaacattgcaga |
53454380 |
T |
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| Q |
201 |
taagtttgcaaccaccttcagtgcagatggaactcataatttgattgttcgtctccgacataatgtcatcaggactggtttacgtaacatcagcatctcc |
300 |
Q |
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| T |
53454379 |
taagtttgcaaccaccttcagtgcagatggaactcataatttgattgttcgtctccgacataatgtcatcaggactggtttacgtaacatcagcatctcc |
53454280 |
T |
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| Q |
301 |
tattctcgcatctcactagctgatgttgctaaaaagttgaggttggactcgccaaatcctgtttctgatgctgagagcattgtctcgaaggctattcgtg |
400 |
Q |
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| T |
53454279 |
tattctcgcatctcactagctgatgttgctaaaaagttgaggttggactcgccaaatcctgttgctgatgctgagagcattgtctcgaaggctattcgtg |
53454180 |
T |
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| Q |
401 |
atggagcaattgatgctacattggatc |
427 |
Q |
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| T |
53454179 |
atggagcaattgatgctacattggatc |
53454153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 139 - 427
Target Start/End: Complemental strand, 8378830 - 8378542
Alignment:
| Q |
139 |
tatgttgtggaattccaggctgtccgtattggagatttggagctgtttaggaacattgcagataagtttgcaaccaccttcagtgcagatggaactcata |
238 |
Q |
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|||||||||||||| |||||||| | ||||| ||||| ||||| |||||||| ||||||| |||| ||| || || |||| | |||| ||||| ||| |
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| T |
8378830 |
tatgttgtggaatttcaggctgttaggattggtgatttagagctctttaggaatgttgcagagaagtatgctactactttcaatacagacggaaccaata |
8378731 |
T |
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| Q |
239 |
atttgattgttcgtctccgacataatgtcatcaggactggtttacgtaacatcagcatctcctattctcgcatctcactagctgatgttgctaaaaagtt |
338 |
Q |
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| T |
8378730 |
atttgatcgttcgattgcgccataatgtcatcaggactggtttgcgtaacatcagtatatcgtattctcgcatctcactggccgatgtagctcagaaatt |
8378631 |
T |
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| Q |
339 |
gaggttggactcgccaaatcctgtttctgatgctgagagcattgtctcgaaggctattcgtgatggagcaattgatgctacattggatc |
427 |
Q |
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| T |
8378630 |
gaggttgagctctgcagatcccattgctgatgctgaaagcattatatcaaaggctatccgtgatggggcaattgatgcgacattggatc |
8378542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 48877404 - 48877454
Alignment:
| Q |
157 |
gctgtccgtattggagatttggagctgtttaggaacattgcagataagttt |
207 |
Q |
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| T |
48877404 |
gctgtccggattagagacttggagctgtttaggaatattgcagataagttt |
48877454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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