View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7428_high_16 (Length: 382)
Name: NF7428_high_16
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7428_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 364
Target Start/End: Original strand, 12815548 - 12815901
Alignment:
| Q |
12 |
atgaatcacgataagcatatgatacacatgtctggaaattaaaataattaaatcagctagcaaaaagtaatattcaannnnnnnggcttaaataacaaat |
111 |
Q |
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| T |
12815548 |
atgaatcacgataagcatatgattcacatgtctggaaattaaaataattagatcagctagcaaaaagtaatattcaattattttggcttaaataacaaat |
12815647 |
T |
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| Q |
112 |
aaaatgttgcttaataataaaaggtaattgacgataatttcactannnnnnnatagatattttcaatattattaaggctctttcccacacagnnnnnnnn |
211 |
Q |
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| T |
12815648 |
aaaatgttgcttaataataaaaggtaattgacgataatttcactattttttt-tagataatttcaatattattaaggctctttcccacacagaaagaaaa |
12815746 |
T |
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| Q |
212 |
--ttgctaggattcgttgatggtggtcacttcaacaccacaaagccttatataaagcattgaaagcaatatgaaagatgttcacttggcttcaaaagtaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12815747 |
atttgctaggattcgttgatggtggtcacttcaacaccacaaagccttatataaagcattgaaagcaatatgaaagatgttcacttggcttcaaaagtaa |
12815846 |
T |
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| Q |
310 |
aacgctatggtgctacttaatttatagacctatccatgaattgacaatacctttg |
364 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12815847 |
aacgctatggtactacttaatatatagacctatccatgaattgacaatacctttg |
12815901 |
T |
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