View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7428_high_4 (Length: 680)

Name: NF7428_high_4
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7428_high_4
NF7428_high_4
[»] chr2 (1 HSPs)
chr2 (19-671)||(42124004-42124656)


Alignment Details
Target: chr2 (Bit Score: 649; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 19 - 671
Target Start/End: Original strand, 42124004 - 42124656
Alignment:
Q  19 atgtttgataccatgttcttgtcaatgttaatgctggtgtcgctttctttttcagcaatggttctttttcaggtaatggagctgatgatgctattggaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42124004 atgtttgataccatgttcttgtcaatgttaatgctggtgtcgctttctttttcagcaatggttctttttcaggtaatggagctgatgatgctattggaca 42124103  T
Q  119 gcaggacaagtcaaccttaacattggattgttgtacaaggtttctccaagcttctgggagtggctgtctattgcgcacgtgctgacatatctcatagatc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42124104 gcaggacaagtcaaccttaacattggattgttgtacaaggtttctccaagcttctgggagtggctgtctattgcgcacgtgctgacatatctcatagatc 42124203  T
Q  219 aatgaacggccgtgatcaattgaagcactttgtgtgctggaagtagctgtaattgtatccaactcattgcttttaagataaggattaaactcaagctttt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42124204 aatgaacggccgtgatcaattgaagcactttgtgtgctggaagtagctgtaattgtatccaactcattgcttttaagataaggattaaactcaagctttt 42124303  T
Q  319 gtgaatcttccataggaatattttcattgaggttaatctctccaacatcagtgaaagggaattcattttcatcccatggtttagtacaatccaatgcaac 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42124304 gtgaatcttccataggaatattttcattgaggttaatctctccaacatcagtgaaagggaattcattttcatcccatggtttagtacaatccaatgcaac 42124403  T
Q  419 ctcgcggccttgtgtatcgtctggaactggtcttacttgaatttgaaaaacgtaagaaactccattggaggaactaacacggttttgaaaatcattagca 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42124404 ctcgcggccttgtgtatcgtctggaactggtcttacttgaatttgaaaaacgtaagaaactccattggaggaactaacacggttttgaaaatcattagca 42124503  T
Q  519 aggaaaagcaaaggacgtgaatcattttcatctctagcaattgcacctgtctctggtggcagaatccctgtcggattaactttacctttgtcttcactga 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42124504 aggaaaagcaaaggacgtgaatcattttcatctctagcaattgcacctgtctctggtggcagaatccctgtcggattaactttacctttgtcttcactga 42124603  T
Q  619 tgctggtgtcatgaggccttaacttgaatttcacatacatttgatgtccatct 671  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42124604 tgctggtgtcatgaggccttaacttgaatttcacatacatttgttgtccatct 42124656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University