View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7428_high_5 (Length: 647)

Name: NF7428_high_5
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7428_high_5
NF7428_high_5
[»] chr8 (4 HSPs)
chr8 (90-467)||(32416140-32416517)
chr8 (572-625)||(32415982-32416035)
chr8 (20-66)||(32416539-32416585)
chr8 (572-600)||(12491897-12491925)
[»] chr2 (3 HSPs)
chr2 (376-468)||(42798707-42798799)
chr2 (572-600)||(16546763-16546791)
chr2 (572-600)||(39069785-39069813)
[»] chr1 (1 HSPs)
chr1 (376-468)||(29798608-29798700)
[»] chr7 (3 HSPs)
chr7 (376-468)||(37202931-37203023)
chr7 (572-600)||(13465789-13465817)
chr7 (572-600)||(25439331-25439359)
[»] chr3 (1 HSPs)
chr3 (421-468)||(3457700-3457747)
[»] chr6 (1 HSPs)
chr6 (572-600)||(1780400-1780428)
[»] chr4 (1 HSPs)
chr4 (572-600)||(2407484-2407512)


Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 90 - 467
Target Start/End: Complemental strand, 32416517 - 32416140
Alignment:
Q  90 gtgatgaatgaatcagagtttaagaaggaagaaacttctttttgtcgttccctagggggagagatataaatgagagtggggatacacatattgagaggga 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32416517 gtgatgaatgaatcagagtttaagaaggaagaaacttctttttgtcgttccctagggagagagatataaatgagagtggggatacacatattgagaggga 32416418  T
Q  190 gattctgaagatctagggcttaaagcaatcatttaatgtgatggtcttattgggttcacctaatcaaccccaatcgtttattttgtcttcactcattgnn 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  32416417 gattctgaagatctagggcttaaagcaatcatttaatgtgatggtcttattgggttcacctaatcaaccccaatcgtttattttgtcttcactcattgtt 32416318  T
Q  290 nnnnngggataatcttcactcattttggttatatatggatatttaaaccttgatggagttcttcccatgtctaaccccacccaacg--ggcgaagttagc 387  Q
         |||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||| ||| |||| ||  | ||||||||||    
T  32416317 tttttgggataatcttcactcatttcggttatatatggatattt--accttgatggagttcttcccatgtctaatccctcccagcggcgacgaagttagc 32416220  T
Q  388 aaaaattttacggaggggctaactataagaaagcaataaaatatttttgaaatgaacatatttaatttaaggataaaaat 467  Q
    ||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  32416219 aaaaattttacggaggggctaactataaggaaataataaaatatttttgaaatgaacatatttaatttaaggataaaaat 32416140  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 572 - 625
Target Start/End: Complemental strand, 32416035 - 32415982
Alignment:
Q  572 gtgtttttagtcttgtatttaatctctaatgcaagcaaataggttatttgcaag 625  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32416035 gtgtttttagtcttgtatttaatctctaatgcaagcaaataggttatttgcaag 32415982  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 32416585 - 32416539
Alignment:
Q  20 gtggtgacttgatgagttcatgcagctgggttttttgttttgggggt 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32416585 gtggtgacttgatgagttcatgcagctgggttttttgttttgggggt 32416539  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 572 - 600
Target Start/End: Complemental strand, 12491925 - 12491897
Alignment:
Q  572 gtgtttttagtcttgtatttaatctctaa 600  Q
    |||||||||||||||||||||||||||||    
T  12491925 gtgtttttagtcttgtatttaatctctaa 12491897  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 376 - 468
Target Start/End: Original strand, 42798707 - 42798799
Alignment:
Q  376 ggcgaagttagcaaaaattttacggaggggctaactataagaaagcaataaaatatttttgaaatgaacatatttaatttaaggataaaaatg 468  Q
    ||||||| ||||||||| |||| | ||||||||| ||||| | | ||||||||||||||| |||  || ||||| ||||||||||||||||||    
T  42798707 ggcgaagctagcaaaaaatttatgcaggggctaaatataaaagaacaataaaatatttttaaaacaaatatattaaatttaaggataaaaatg 42798799  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 572 - 600
Target Start/End: Complemental strand, 16546791 - 16546763
Alignment:
Q  572 gtgtttttagtcttgtatttaatctctaa 600  Q
    |||||||||||||||||||||||||||||    
T  16546791 gtgtttttagtcttgtatttaatctctaa 16546763  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 572 - 600
Target Start/End: Original strand, 39069785 - 39069813
Alignment:
Q  572 gtgtttttagtcttgtatttaatctctaa 600  Q
    |||||||||||||||||||||||||||||    
T  39069785 gtgtttttagtcttgtatttaatctctaa 39069813  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 376 - 468
Target Start/End: Original strand, 29798608 - 29798700
Alignment:
Q  376 ggcgaagttagcaaaaattttacggaggggctaactataagaaagcaataaaatatttttgaaatgaacatatttaatttaaggataaaaatg 468  Q
    ||||||| ||||| ||| |||| | |||||| || ||||||  | ||||||||||||||| ||| ||| ||||| ||||||||||||||||||    
T  29798608 ggcgaagctagcataaaatttatgcaggggccaaatataagggaacaataaaatatttttaaaacgaatatattaaatttaaggataaaaatg 29798700  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 376 - 468
Target Start/End: Complemental strand, 37203023 - 37202931
Alignment:
Q  376 ggcgaagttagcaaaaattttacggaggggctaactataagaaagcaataaaatatttttgaaatgaacatatttaatttaaggataaaaatg 468  Q
    ||||||| ||||||||| |||||| |||||| || |||||  ||  | |||||||||||| ||||||| || || ||| ||||||||||||||    
T  37203023 ggcgaagctagcaaaaaatttacgcaggggccaattataaagaaatagtaaaatatttttaaaatgaatatgttaaatctaaggataaaaatg 37202931  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 572 - 600
Target Start/End: Complemental strand, 13465817 - 13465789
Alignment:
Q  572 gtgtttttagtcttgtatttaatctctaa 600  Q
    |||||||||||||||||||||||||||||    
T  13465817 gtgtttttagtcttgtatttaatctctaa 13465789  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 572 - 600
Target Start/End: Original strand, 25439331 - 25439359
Alignment:
Q  572 gtgtttttagtcttgtatttaatctctaa 600  Q
    |||||||||||||||||||||||||||||    
T  25439331 gtgtttttagtcttgtatttaatctctaa 25439359  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 468
Target Start/End: Original strand, 3457700 - 3457747
Alignment:
Q  421 caataaaatatttttgaaatgaacatatttaatttaaggataaaaatg 468  Q
    ||||||||||||||| ||| ||| ||||| ||||||||||||||||||    
T  3457700 caataaaatatttttaaaacgaatatattcaatttaaggataaaaatg 3457747  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 572 - 600
Target Start/End: Original strand, 1780400 - 1780428
Alignment:
Q  572 gtgtttttagtcttgtatttaatctctaa 600  Q
    |||||||||||||||||||||||||||||    
T  1780400 gtgtttttagtcttgtatttaatctctaa 1780428  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 572 - 600
Target Start/End: Complemental strand, 2407512 - 2407484
Alignment:
Q  572 gtgtttttagtcttgtatttaatctctaa 600  Q
    |||||||||||||||||||||||||||||    
T  2407512 gtgtttttagtcttgtatttaatctctaa 2407484  T

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