View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7428_high_8 (Length: 589)
Name: NF7428_high_8
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7428_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 20 - 581
Target Start/End: Complemental strand, 31602471 - 31601912
Alignment:
| Q |
20 |
agagacgataatgcgcagaagaattctgctgagcattttccacgtcatctagagttttgtgaaatccatgagtattcttgtttaaaaccaccttcactct |
119 |
Q |
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| T |
31602471 |
agagacgataatgcgcagaagaattctgctgagcattttccacgtcatctagagttttgtgaaatccatgagtattcttgtttaaaaccaccttcactct |
31602372 |
T |
|
| Q |
120 |
gataaaagaccagtttcgtagtcttagtttggacatatcatccatgattttcaaacttaacgtactgtcctcgcaaaattccagacttttgtgcttgtcc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31602371 |
gataaaagaccagtttcgtagtcttagtttggacatatcatccatgattttcaaacttaacgtactgtcctcgcaaaattccagacttttgtgcttgtcc |
31602272 |
T |
|
| Q |
220 |
aaaacacggcaaaacatatgctattgctaaggcatcactagtgagaactcaatttttctcgtgcaaatttagaagttgctcgttgnnnnnnnnnnnnnac |
319 |
Q |
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| T |
31602271 |
aaaacacggcaaaacatatgctattgctaaggcatcactagtgagaactcaatttttctcgtgcaactttagaagttgctcgttgttttttcttttttac |
31602172 |
T |
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| Q |
320 |
caatgtcctcatcattgtctcccatgctatatttctcacatctctgaatatctattgcttaccatttccttcgttttacgttacaaaatgatttgacaaa |
419 |
Q |
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| T |
31602171 |
caatgtcctcatcattgtctcccatgctatatttctcacatctctgaatatctattgcttaccatttccttcgttttacgttacaaaatgatttgacaaa |
31602072 |
T |
|
| Q |
420 |
ctcaatgcagcagcagctgaaatagcatatgccaaaggcagacgtggattacatttttatgatcatgccttgtatttttaatgacagtgaggatcattct |
519 |
Q |
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| T |
31602071 |
ctcaatgcagcagcagctgaaatagcatatgccaaaggcagacgtggattaca--tttatgatcatgccttgtatttttaatgacagtgaggatcattct |
31601974 |
T |
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| Q |
520 |
ataatgacaaggactcaaagtgtaatgagtcatggcctttaccaaaattataagttcatctc |
581 |
Q |
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| T |
31601973 |
ataatgacaaggactcaaagtgtaatgagtcatggcctttaccaaaattataagttcatctc |
31601912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 423 - 563
Target Start/End: Original strand, 33086409 - 33086538
Alignment:
| Q |
423 |
aatgcagcagcagctgaaatagcatatgccaaaggcagacgtggattacatttttatgatcatgccttgtatttttaatgacagtgaggatcattctata |
522 |
Q |
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| T |
33086409 |
aatgcagcagcagctgaaatagcatatgccca---------tggattacattt--atgctcgtgccttgtatttttaatgacagtgaggatcattctata |
33086497 |
T |
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| Q |
523 |
atgacaaggactcaaagtgtaatgagtcatggcctttacca |
563 |
Q |
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| T |
33086498 |
atgacaaggactcaaagggtaatgagccttggcctttacca |
33086538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 331 - 539
Target Start/End: Complemental strand, 49777756 - 49777549
Alignment:
| Q |
331 |
tcattgtctcccatgctatatttctc--acatctctgaatatctattgcttaccatttccttcgttttacgttacaaaatgatttgacaaactcaatgca |
428 |
Q |
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| T |
49777756 |
tcattgtctcccattctagatttctcggacgtttctgaatctttgttgct-atcatttccttcatattgcattacaaaaggatttggcaaactcaaagca |
49777658 |
T |
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| Q |
429 |
gcagcagctgaaatagcatatgccaaaggcagacgtggattacatttttatgatcatgccttgtatttttaatgacagtgaggatcattctataatgaca |
528 |
Q |
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| T |
49777657 |
gcagcagctgcaacagcatatgccaaaagcagacttgagttac--gaatatgcttgtaccttgtattttttataacagtaaggatcattctagaatgacg |
49777560 |
T |
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| Q |
529 |
aggactcaaag |
539 |
Q |
| |
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| T |
49777559 |
aggactcaaag |
49777549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 382 - 539
Target Start/End: Original strand, 7991610 - 7991765
Alignment:
| Q |
382 |
catttccttcgttttacgttacaaaatgatttgacaaactcaatgcagcagcagctgaaatagcatatgccaaaggcagacgtggattacatttttatga |
481 |
Q |
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|||||||||| | || | |||||||| |||||| ||||||||| ||||||||||||| || ||||||||||||| |||||| || ||||| || | |
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| T |
7991610 |
catttccttcatattgcattacaaaaggatttggcaaactcaaagcagcagcagctgcaacagcatatgccaaaagcagacttgagttaca--aatacgc |
7991707 |
T |
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| Q |
482 |
tcatgccttgtatttttaatgacagtgaggatcattctataatgacaaggactcaaag |
539 |
Q |
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| | |||||||||||| || ||||| |||||||||||| |||||| ||||||||||| |
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| T |
7991708 |
ttgtaccttgtattttttataacagtaaggatcattctagaatgacgaggactcaaag |
7991765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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