View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7428_low_12 (Length: 507)
Name: NF7428_low_12
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7428_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 244 - 504
Target Start/End: Original strand, 32616405 - 32616665
Alignment:
| Q |
244 |
tgcttagcacagaacagtaccttccaagaaaaagttgttcagagaggatgatgcaagccagggccgttacgatgatcatacgtacaggattaaaagcagt |
343 |
Q |
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| T |
32616405 |
tgcttagcacagaacagtaccttccaagaaaaagttgttcagagaggatgatgcaagccagggccgttacgatgatcatacgtacaggattaaaagcagt |
32616504 |
T |
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| Q |
344 |
tacaataactggtcccatagtttttataaccagaccttgtatgtaatactgcactcctgatgtaactattccctgtaataatcaatcacnnnnnnnnnnn |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32616505 |
tacaataactggtcccatagtttttataaccagaccttgtatgtaatactgcactcctgatgtaactattccctgtaataatcaatcacaaaaaaggaag |
32616604 |
T |
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| Q |
444 |
nnnnnnnnttgtttaatgatacttgagaagcaatacttgtattgtgtccaaatagtgcaag |
504 |
Q |
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| T |
32616605 |
aaaaaaaattgtttaatcatacttgagaagcaatacttgtattgtgtccaaatagcgcaag |
32616665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 2 - 173
Target Start/End: Original strand, 32616171 - 32616345
Alignment:
| Q |
2 |
tttcatttctaggagctgtgactggtagctgttgttgctggtcttgcaatgagtcct---ttgtaggggagggtggcatatcgacatgatttcgagcttt |
98 |
Q |
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| T |
32616171 |
tttcatttctaggagctgtaactggtagctgctgctgttggtcttgcaatgagtcctcttttgtaggggagggtggcatatcaacatgatttcgagcttt |
32616270 |
T |
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| Q |
99 |
gtattcttttgattttccccatacaactagataaagcccaagaaccaccactatggctccaataatactgtcatc |
173 |
Q |
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| T |
32616271 |
gtattcttttgattttccccacacaactagataaagcccaagaaccaccactatggctccaataatactgtcatc |
32616345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 367
Target Start/End: Original strand, 10624060 - 10624166
Alignment:
| Q |
261 |
taccttccaagaaaaagttgttcagagaggatgatgcaagccagggccgttacgatgatcatacgtacaggattaaaagcagttacaataactggtccca |
360 |
Q |
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|||||||||||| |||| |||||||||| || ||||||| ||| || || || |||||||| | ||||||||||||||| |||| ||| ||||||| |
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| T |
10624060 |
taccttccaagatggagtttctcagagaggacaatacaagccaaggctgtgactataatcatacgcaaaggattaaaagcagtcacaaaaacaggtccca |
10624159 |
T |
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| Q |
361 |
tagtttt |
367 |
Q |
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||||||| |
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| T |
10624160 |
tagtttt |
10624166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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