View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7428_low_13 (Length: 436)
Name: NF7428_low_13
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7428_low_13 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 2307359 - 2307777
Alignment:
| Q |
18 |
aagagatgcccttaactttgagtccatgatatgatgtaatattaggactcacattttattagcaatcttgattgaaaaaacaaagtaaaacttgataagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2307359 |
aagagatgcccttaactttgagtccatgatatgatgtaatattaggactcacattttattagcaatcttgattgaaaaaacaaagtaaaacttgataagc |
2307458 |
T |
|
| Q |
118 |
agaaaaatggggggannnnnnngttagagatatctaattgcacttgcagcacctatcttctgcagaaatatgcagtatacaactgatcaatgctaatttc |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2307459 |
agaaaaatggggggatttttttgttagagatatctaattgcacttgcagcacctatcttctgcagaaatatgcagtatacaactgatcaatgctaatttc |
2307558 |
T |
|
| Q |
218 |
gttnnnnnnnnttcctggcatgatgcatgcaaagggccataaacaaactagatcattgaagcattattagatttataagattgaatgtgccaagtgcaaa |
317 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2307559 |
gttaaaaaaaattcctggcatgatgcatgcaaagggccgtaaacaaactagatcattgaagcattattagatttataagattgaatgtgccaagtgcaaa |
2307658 |
T |
|
| Q |
318 |
caaaatacatgtactgtgctcttctttaattggagataatagataccaatgattnnnnnnnctagaagtgtattcaagcatggaatcattaacctctaaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2307659 |
caaaatacatgtactgtgctcttctttaattggagataatagataccaatgattaaaaaaactagaagtgtattcaagcctggaatcattaacctctaaa |
2307758 |
T |
|
| Q |
418 |
gagactatttagttttaaa |
436 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2307759 |
gagactatttagttttaaa |
2307777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 98 - 436
Target Start/End: Original strand, 2316648 - 2316977
Alignment:
| Q |
98 |
caaagtaaaacttgataagcagaaaaatggggggannnnnnn-gttagagatatctaattgcacttgcagcacctatcttctgcagaaatatgcagtata |
196 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||| ||| || ||| ||||||||||||||||||||||||||| |
|
|
| T |
2316648 |
caaagcaaaacttgataagcagaaaaatggggggaattttttagttagagatatctgattaca------gcatctatcttctgcagaaatatgcagtata |
2316741 |
T |
|
| Q |
197 |
caactgatcaatgctaatttcgttnnnnnnnnttcctggcatgatgcatgcaaagggccataaacaaactagatcattgaagcattattagatttataag |
296 |
Q |
| |
|
| |||| | |||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2316742 |
ccactgct----gctaatttcgttaaaaaaaattcctcccatgatgcatgcaaagggccgtaaacaaactagatcattgaagcattattagatttataag |
2316837 |
T |
|
| Q |
297 |
attgaatgtgccaagtgcaaacaaaatacatgtactgtgctcttctttaattggagataatagataccaatgattnnnnnnnctagaagtgtattcaagc |
396 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
2316838 |
attgaatttgccaagtgcaaacaaaatacacgtactgttctcttctttaattggagataatagatgccaatgattaaaaaaactagaagtgtattcaagc |
2316937 |
T |
|
| Q |
397 |
atggaatcattaacctctaaagagactatttagttttaaa |
436 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
2316938 |
ctggaatcattaacgtctaaagagactatttagtgttaaa |
2316977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 98
Target Start/End: Original strand, 2316574 - 2316609
Alignment:
| Q |
63 |
gactcacattttattagcaatcttgattgaaaaaac |
98 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2316574 |
gactcacattttattaacaatcttgattgaaaaaac |
2316609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University