View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7428_low_14 (Length: 428)
Name: NF7428_low_14
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7428_low_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 36454070 - 36453660
Alignment:
| Q |
18 |
cttttacgtctagcctattatcaccgtatagtcttcttacaaacgacattacacttgagatggagaaatattcaaaacattaatgtgttttggagagcag |
117 |
Q |
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| T |
36454070 |
cttttacgtctagcctattatcaccgtatagtctttttacaaacgacattacacttgagatggagaaatattcaaaacattaatgtgttttggagagcag |
36453971 |
T |
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| Q |
118 |
aatctatggttttctacaaagattaatcatcatgtgaaaacttcatactataacataaggaaaatatagtcttccttatnnnnnnnncataaatatagta |
217 |
Q |
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| T |
36453970 |
aatctatggttttctacaaagattaatcatcctttgaaaacttcatactataacataaggaaaatatagtcttccttaaaaaaaaaacataaatatagta |
36453871 |
T |
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| Q |
218 |
tgtgattacttctaaaagaatgacaagatattacttttttctattgtaaacaaattcctggtttaggatttaattatgcccaacatttagatgattgtct |
317 |
Q |
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| T |
36453870 |
tgtgattacttctaaaagaatgacaagatattacttttttctattgtaaacaaattcctggtttaggatttaattatgcccaacatttagatgattgtct |
36453771 |
T |
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| Q |
318 |
tggtctttgtttaccaaccacatccacaagaagaggtcttgcaaggtatatgcatgttttgacttaaaaggttagatccaatttagttgttcccattccc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36453770 |
tggtctttgtttaccaaccacatccacaagaagaggtcttgcaaggtatatgcatgttttgacttaaaaggttagatccaatttagttgttcccattccc |
36453671 |
T |
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| Q |
418 |
aaataggttca |
428 |
Q |
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| T |
36453670 |
aaataggttca |
36453660 |
T |
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