View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7428_low_16 (Length: 383)
Name: NF7428_low_16
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7428_low_16 |
 | |
|
| [»] scaffold0349 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0277 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 24)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 26890019 - 26890275
Alignment:
| Q |
1 |
tgaagaatcaagtgccgatgaattcaacctgttgttggttatttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26890019 |
tgaagaatcaagtgccgatgaattcagcctgttgttggttatttgcacaacttttctctaaccaaaactaaacatttattttttatttgactgtacattg |
26890118 |
T |
|
| Q |
101 |
tcaggaaactatctgtagtcatctggctatttttactgtcatgggagatgtctagtggttgctcgcaccacagaatctgtcggttgttctaaagggcagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26890119 |
tcaggaaactatctgtagtcatctggctatttttactgtcatgggagatgtctagaggttgttcgcaccacagaatccgtcggttgttctaaagggcagt |
26890218 |
T |
|
| Q |
201 |
gagtaacggtatgctttgcagctcagttgaagagttatgagaatttcaatcgtagta |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26890219 |
gagtaacggtatgctttgcagctcagttgaagagttatgagaatttcaatcgtagta |
26890275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 182 - 373
Target Start/End: Original strand, 26890566 - 26890755
Alignment:
| Q |
182 |
ggttgttctaaagggcagtgagtaacggtatgctttgcagctcagttgaagagttatgagaatttcaatcgtagtacacaaattggaatcaatgtgttca |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26890566 |
ggttgttctaaagggcagtgagtaacggtatgctttgcagctcatttgaagagttatgagaatttcaatcgtagtacacaaattggaatcaatgtgttca |
26890665 |
T |
|
| Q |
282 |
ggaaaaaaggaagcacgaaggaggatgtgataatcaccaatgctcatgtaaagagtaaaccagatgaaggtcagaacttgtgtcacagcaac |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26890666 |
ggaaaaaaggaagcacgaaggaggatgtgataatcaccaatgctcatgtaaagag--aaccagatgaaggtcagaacttgtgtcacagcaac |
26890755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 49 - 361
Target Start/End: Original strand, 26853623 - 26853933
Alignment:
| Q |
49 |
aacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatgggaga |
148 |
Q |
| |
|
||||||||||||||||||||||| ||| | || || |||||| || ||||||||| | | |||||| ||||||||||||||| | |||||| ||| |
|
|
| T |
26853623 |
aacttttctctaaccaaaactaagaatt-acttgttctttgaccgtgcattgtcagtatcc-atctgtggtcatctggctatttgcattgtcattcaaga |
26853720 |
T |
|
| Q |
149 |
tgtctagtggttgctcgcaccacagaatctgtcggttgttctaaagggcagtgagtaacggtatgctttgcagctcagttgaagagttatgagaatttca |
248 |
Q |
| |
|
| ||||| |||||| | ||||||| ||||||| || ||||| |||||||||||||||| | ||||||||||||| |||||| |||||| |||||| |||| |
|
|
| T |
26853721 |
tatctaggggttgcgcacaccacaaaatctgttggctgttcgaaagggcagtgagtaatgatatgctttgcagcccagttgtagagttttgagaaattca |
26853820 |
T |
|
| Q |
249 |
atcgtagtacacaaattggaatcaatgtgttcaggaaaaaaggaagcacgaaggaggatgtgataatcaccaatgctcatgtaaagagtaaaccagatga |
348 |
Q |
| |
|
|| ||||||||||||||||| ||| |||||| ||| |||||||||||||||||||||||||| ||||||| || ||| |||||||||| ||||||| |
|
|
| T |
26853821 |
attttagtacacaaattggaaccaacatgttcaagaatgaaggaagcacgaaggaggatgtgatattcaccaacccttatggaaagagtaaatcagatga |
26853920 |
T |
|
| Q |
349 |
aggtcagaacttg |
361 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
26853921 |
aagtcagaacttg |
26853933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 41 - 322
Target Start/End: Complemental strand, 27714257 - 27713976
Alignment:
| Q |
41 |
atttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtc |
140 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||| || || |||||||||||||||||||||||| | ||||||||||||||||||| | |||| |
|
|
| T |
27714257 |
atttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtc |
27714158 |
T |
|
| Q |
141 |
atgggagatgtctagtggttgctcgcaccacagaatctgtcggttgttctaaagggcagtgagtaacggtatgctttgcagctcagttgaagagttatga |
240 |
Q |
| |
|
||| || | |||||| ||||||| || | ||||||| || |||||||| ||||||||| |||||| | |||||||||||||||||||| || | | ||| |
|
|
| T |
27714157 |
atgcgacaagtctagaggttgcttacagcgcagaatccgttggttgttcgaaagggcagcgagtaatgatatgctttgcagctcagttggagtgctttga |
27714058 |
T |
|
| Q |
241 |
gaatttcaatcgtagtacacaaattggaatcaatgtgttcaggaaaaaaggaagcacgaaggaggatgtgataatcaccaat |
322 |
Q |
| |
|
||||||||||| |||||||||| |||||||| | ||||||| || |||||||||| || ||||||| | || |||||||| |
|
|
| T |
27714057 |
gaatttcaatcttagtacacaatttggaatctacgtgttcaacaagaaaggaagcatgagagaggatgcggtattcaccaat |
27713976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 27702516 - 27702263
Alignment:
| Q |
15 |
ccgatgaattcaacctgttgttggttatttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatct |
114 |
Q |
| |
|
||||||| |||| |||||||| || |||| |||||||||||||||||||||||||| |||| || || |||||||||||||||||||||||| | | |
|
|
| T |
27702516 |
ccgatgatttcagcctgttgtctgtaatttacgcaacttttctctaaccaaaactaagtattttcttgttttttgactgtacattgtcaggaaacgacat |
27702417 |
T |
|
| Q |
115 |
gtagtcatctggctatttttactgtcatgggagatgtctagtggttgctcgcaccacagaatctgtcggttgttctaaagggcagtgagtaacggtatgc |
214 |
Q |
| |
|
|||||||||||||||||| | ||||||| || | |||||| ||||||| || ||||||||| || |||||||| ||||| |||||||||| | ||||| |
|
|
| T |
27702416 |
gtagtcatctggctatttgcattgtcatgcgacaagtctagaggttgcttacagcacagaatccgttggttgttcgaaaggacagtgagtaatgatatgc |
27702317 |
T |
|
| Q |
215 |
tttgcagctcagttgaagagttatgagaatttcaatcgtagtacacaaattgga |
268 |
Q |
| |
|
||||||||||||||| || | | |||||||||| ||| |||||||||| ||||| |
|
|
| T |
27702316 |
tttgcagctcagttggagtgctttgagaatttccatcttagtacacaatttgga |
27702263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 47 - 199
Target Start/End: Original strand, 26966104 - 26966256
Alignment:
| Q |
47 |
gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatggga |
146 |
Q |
| |
|
|||||||||||| |||||||||||| | |||| || || ||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| || |
|
|
| T |
26966104 |
gcaacttttctcaaaccaaaactaagcttttacttgttctttgactgtacattgtcaggacaccatctgtagtcatctggctatttgcactgtcatgcga |
26966203 |
T |
|
| Q |
147 |
gatgtctagtggttgctcgcaccacagaatctgtcggttgttctaaagggcag |
199 |
Q |
| |
|
|||||||| | ||||| ||||||||||||| || |||||||| ||||||||| |
|
|
| T |
26966204 |
catgtctagagattgcttgcaccacagaatccgttggttgttcgaaagggcag |
26966256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 26627966 - 26628216
Alignment:
| Q |
1 |
tgaagaatcaagtgccgatgaattcaacctgttgttggttatttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattg |
100 |
Q |
| |
|
||||||||| | | ||||||| |||| ||||| || ||| |||| |||||||||||||||||||||||||| |||| ||| || ||||||||||||||| |
|
|
| T |
26627966 |
tgaagaatccattcccgatgatttcagcctgtcgtcggtaatttacgcaacttttctctaaccaaaactaagtatttttttgttctttgactgtacattg |
26628065 |
T |
|
| Q |
101 |
tcaggaaactatctgtagtcatctggctatttttactgtcatgggagatgtctagtggttgctcgcaccacagaatctgtcggttgttctaaagggcagt |
200 |
Q |
| |
|
||||||||| | | ||||||||||||| | | | ||||||| |||||||||| ||||||| |||| ||| |||| || || ||||| || ||| ||| |
|
|
| T |
26628066 |
tcaggaaaccacatttagtcatctggctctctgcattgtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaatgggaagt |
26628165 |
T |
|
| Q |
201 |
gagtaacggtatgctttgcagctcagttgaagagttatgagaatttcaatc |
251 |
Q |
| |
|
|||||| | ||||| || || |||||||| || | | |||||||||||||| |
|
|
| T |
26628166 |
gagtaatgatatgcattacatctcagttggagtgctttgagaatttcaatc |
26628216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 26733943 - 26734193
Alignment:
| Q |
1 |
tgaagaatcaagtgccgatgaattcaacctgttgttggttatttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattg |
100 |
Q |
| |
|
||||||||| | | ||||||| |||| ||||| || ||| |||| |||||||||||||||||||||||||| |||| ||| || ||||||||||||||| |
|
|
| T |
26733943 |
tgaagaatccattcccgatgatttcagcctgtcgtcggtaatttacgcaacttttctctaaccaaaactaagtatttttttgttctttgactgtacattg |
26734042 |
T |
|
| Q |
101 |
tcaggaaactatctgtagtcatctggctatttttactgtcatgggagatgtctagtggttgctcgcaccacagaatctgtcggttgttctaaagggcagt |
200 |
Q |
| |
|
||||||||| | | ||||||||||||| | | | ||||||| |||||||||| ||||||| |||| ||| |||| || || ||||| || ||| ||| |
|
|
| T |
26734043 |
tcaggaaaccacatttagtcatctggctctctgcattgtcatgcaagatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaatgggaagt |
26734142 |
T |
|
| Q |
201 |
gagtaacggtatgctttgcagctcagttgaagagttatgagaatttcaatc |
251 |
Q |
| |
|
|||||| | ||||| || || |||||||| || | | |||||||||||||| |
|
|
| T |
26734143 |
gagtaatgatatgcattacatctcagttggagtgctttgagaatttcaatc |
26734193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 47 - 218
Target Start/End: Original strand, 26651110 - 26651281
Alignment:
| Q |
47 |
gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatggga |
146 |
Q |
| |
|
|||| |||||| |||||||||||| ||| | || || |||| ||||||||||||||||||| ||||||||||| ||| |||| | | ||||||| || |
|
|
| T |
26651110 |
gcaagttttctttaaccaaaactacgaattaacttgttctttgtctgtacattgtcaggaaaccatctgtagtcacctgtctatgtgcattgtcatgcga |
26651209 |
T |
|
| Q |
147 |
gatgtctagtggttgctcgcaccacagaatctgtcggttgttctaaagggcagtgagtaacggtatgctttg |
218 |
Q |
| |
|
|||||||| | || ||||||||||||||||||| |||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
26651210 |
tatgtctagagatttctcgcaccacagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttg |
26651281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 47 - 218
Target Start/End: Original strand, 26757078 - 26757249
Alignment:
| Q |
47 |
gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatggga |
146 |
Q |
| |
|
|||| |||||| |||||||||||| ||| | || || |||| ||||||||||||||||||| ||||||||||| ||| |||| | | ||||||| || |
|
|
| T |
26757078 |
gcaagttttctttaaccaaaactacgaattaacttgttctttgtctgtacattgtcaggaaaccatctgtagtcacctgtctatgtgcattgtcatgcga |
26757177 |
T |
|
| Q |
147 |
gatgtctagtggttgctcgcaccacagaatctgtcggttgttctaaagggcagtgagtaacggtatgctttg |
218 |
Q |
| |
|
|||||||| | || ||||||||||||||||||| |||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
26757178 |
tatgtctagagatttctcgcaccacagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttg |
26757249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 47 - 177
Target Start/End: Complemental strand, 27422638 - 27422508
Alignment:
| Q |
47 |
gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatggga |
146 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| || || |||| ||||||||||||||||||| |||||||||||||||||||||| | ||||||| || |
|
|
| T |
27422638 |
gcaacttttctctaacgaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatttgcattgtcatgcga |
27422539 |
T |
|
| Q |
147 |
gatgtctagtggttgctcgcaccacagaatc |
177 |
Q |
| |
|
|||||||| | ||||||||| || |||||| |
|
|
| T |
27422538 |
catgtctagagattgctcgcagcatagaatc |
27422508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 49 - 205
Target Start/End: Original strand, 26828368 - 26828524
Alignment:
| Q |
49 |
aacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatgggaga |
148 |
Q |
| |
|
|||||||||||| |||||||||| ||||| || || ||||||||||||||||||||| | ||||||||| ||||||||||| | ||||||| | || |
|
|
| T |
26828368 |
aacttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcggga |
26828467 |
T |
|
| Q |
149 |
tgtctagtggttgctcgcaccacagaatctgtcggttgttctaaagggcagtgagta |
205 |
Q |
| |
|
||||||||||||||||| |||||| |||| || |||| || |||||||| |||||| |
|
|
| T |
26828468 |
tgtctagtggttgctcgtaccacaaaatccgtttgttgctcgaaagggcaatgagta |
26828524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 31289406 - 31289490
Alignment:
| Q |
137 |
tgtcatgggagatgtctagtggttgctcgcaccacagaatctgtcggttgttctaaagggcagtgagtaacggtatgctttgcag |
221 |
Q |
| |
|
||||||| || |||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||| | |||||||||||| |
|
|
| T |
31289406 |
tgtcatgcgacatgtctagtggttgctcgcagcacagaatccgttggttgttcgaaagggcagtgagtaatgctatgctttgcag |
31289490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 271
Target Start/End: Original strand, 26631460 - 26631693
Alignment:
| Q |
47 |
gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatggga |
146 |
Q |
| |
|
|||||||||||||||||||||| || |||||| || | || || |||||||| ||||||| | ||||||||||||||||| | || | |||| | | |
|
|
| T |
26631460 |
gcaacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaagccatctgtagtcatctggccacttgcattgtcct-caa |
26631558 |
T |
|
| Q |
147 |
gatgtctagtggttgctcgcaccacagaatctg-tcggttgttctaaagggcagtgagtaacggtatgctttgcagctca---------gttgaagagtt |
236 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| | | |||||| |||||||||||||||| | ||||||| |||||||| |||| |||||| |
|
|
| T |
26631559 |
catgtctagaggttgctcgcagcacagaatccgtttacttgttccaaagggcagtgagtaatgctatgcttcgcagctcagttatactggttgcagagtt |
26631658 |
T |
|
| Q |
237 |
atgagaatttcaatcgtagtacacaaattggaatc |
271 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
26631659 |
ttgagaatttcaatattagtacacaaattggaatc |
26631693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 271
Target Start/End: Original strand, 26737435 - 26737668
Alignment:
| Q |
47 |
gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatggga |
146 |
Q |
| |
|
|||||||||||||||||||||| || |||||| || | || || |||||||| ||||||| | ||||||||||||||||| | || | |||| | | |
|
|
| T |
26737435 |
gcaacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaagccatctgtagtcatctggccacttgcattgtcct-caa |
26737533 |
T |
|
| Q |
147 |
gatgtctagtggttgctcgcaccacagaatctg-tcggttgttctaaagggcagtgagtaacggtatgctttgcagctca---------gttgaagagtt |
236 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| | | |||||| |||||||||||||||| | ||||||| |||||||| |||| |||||| |
|
|
| T |
26737534 |
catgtctagaggttgctcgcagcacagaatccgtttacttgttccaaagggcagtgagtaatgctatgcttcgcagctcagttatactggttgcagagtt |
26737633 |
T |
|
| Q |
237 |
atgagaatttcaatcgtagtacacaaattggaatc |
271 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
26737634 |
ttgagaatttcaatattagtacacaaattggaatc |
26737668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 361
Target Start/End: Complemental strand, 27652339 - 27652069
Alignment:
| Q |
95 |
acattgtcaggaaactatctgtagtcatctggctatttttactgtcatgggagatgtctagtggttgctcgcaccacagaatctgtcggttgttctaaag |
194 |
Q |
| |
|
||||||||||||||| |||| | ||||||||||||||| | ||||||| || |||||||| |||||||||||||| |||| | |||||||| |||| |
|
|
| T |
27652339 |
acattgtcaggaaaccatctatggtcatctggctatttgcattgtcatgtgatatgtctagacattgctcgcaccacaaaatccattggttgttccaaag |
27652240 |
T |
|
| Q |
195 |
ggcag-------tgagtaacggtatgctttgcagctcagttgaagagttatgagaatttcaatcgtagtacacaaattggaatcaatgtgttcaggaaaa |
287 |
Q |
| |
|
||||| ||| ||| | || ||||||||||||||| |||| | | | ||||||||| ||||||||||||||||||| | |||||| ||||| |
|
|
| T |
27652239 |
ggcagtgactaatgaataatgacattctttgcagctcagtttgagaggttttaagatttcaatcttagtacacaaattggaatccacatgttcaagaaaa |
27652140 |
T |
|
| Q |
288 |
aaggaagcacgaaggaggatgtgataatcaccaatgctcatgtaaagagtaaaccagatgaaggtcagaacttg |
361 |
Q |
| |
|
||||||| | |||||||||||| ||||| || || || |||||| ||| |||||||| |||||||||| |
|
|
| T |
27652139 |
---gaagcacagaagaggatgtgatattcacctatccttatagaaagagaaaagaagatgaagatcagaacttg |
27652069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 26640678 - 26640758
Alignment:
| Q |
51 |
cttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatt |
131 |
Q |
| |
|
|||||||||| |||||||||| |||||| | || |||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
26640678 |
cttttctctatccaaaactaagcatttactagttctttgactgtacattgtcaggaaaccatctgtagtgatctggctatt |
26640758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 26746644 - 26746724
Alignment:
| Q |
51 |
cttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatt |
131 |
Q |
| |
|
|||||||||| |||||||||| |||||| | || |||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
26746644 |
cttttctctatccaaaactaagcatttactagttctttgactgtacattgtcaggaaaccatctgtagtgatctggctatt |
26746724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 31291346 - 31291462
Alignment:
| Q |
17 |
gatgaattcaacctgttgttggttatttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgt |
116 |
Q |
| |
|
|||||||||| ||||| || ||| |||| ||||||||||||||||| |||||||| |||| || || || || ||| |||| |||||||| |||||| |
|
|
| T |
31291346 |
gatgaattcagcctgtagtcggtaatttacgcaacttttctctaacaaaaactaagtattttcttgttcttcgattgtgaattgccaggaaaccatctgt |
31291445 |
T |
|
| Q |
117 |
agtcatctggctatttt |
133 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
31291446 |
aatcatctggctatttt |
31291462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 27652406 - 27652343
Alignment:
| Q |
46 |
cgcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaac |
109 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || || |||||| |||||||||||||||| |
|
|
| T |
27652406 |
cgcaacttttctctaaccaaaactaagcatttacttgttcattgactttacattgtcaggaaac |
27652343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 26828527 - 26828573
Alignment:
| Q |
222 |
ctcagttgaagagttatgagaatttcaatcgtagtacacaaattgga |
268 |
Q |
| |
|
||||||||||||||| | |||||||||||| ||||| |||||||||| |
|
|
| T |
26828527 |
ctcagttgaagagttttcagaatttcaatcttagtatacaaattgga |
26828573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 26964361 - 26964411
Alignment:
| Q |
55 |
tctctaaccaaaactaaacatttattttttatttgactgtacattgtcagg |
105 |
Q |
| |
|
|||||||||||||||| | ||||| ||||| |||| ||||||||||||||| |
|
|
| T |
26964361 |
tctctaaccaaaactacaaatttactttttctttgtctgtacattgtcagg |
26964411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 26807293 - 26807333
Alignment:
| Q |
87 |
ttgactgtacattgtcaggaaactatctgtagtcatctggc |
127 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
26807293 |
ttgactgtactttgtcaggaaaccatctgtagtcgtctggc |
26807333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 27586755 - 27586671
Alignment:
| Q |
145 |
gagatgtctagtggttgctcgcaccacagaatctgtcggttgttctaaagggcagtgagtaacggtatgctttgcagctcagttg |
229 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||| | ||||| ||| |||||||||||| | ||||||||||| ||||||| |
|
|
| T |
27586755 |
gagatgtctataggtggctcaaaccacagaatctgtggcttgtttgaaatggcagtgagtaatgatatgctttgcaattcagttg |
27586671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 41 - 322
Target Start/End: Original strand, 17687 - 17968
Alignment:
| Q |
41 |
atttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtc |
140 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||| || || |||||||||||||||||||||||| | ||||||||||||||||||| | |||| |
|
|
| T |
17687 |
atttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtc |
17786 |
T |
|
| Q |
141 |
atgggagatgtctagtggttgctcgcaccacagaatctgtcggttgttctaaagggcagtgagtaacggtatgctttgcagctcagttgaagagttatga |
240 |
Q |
| |
|
||| || | |||||| ||||||| || | ||||||| || |||||||| ||||||||| |||||| | |||||||||||||||||||| || | | ||| |
|
|
| T |
17787 |
atgcgacaagtctagaggttgcttacagcgcagaatccgttggttgttcgaaagggcagcgagtaatgatatgctttgcagctcagttggagtgctttga |
17886 |
T |
|
| Q |
241 |
gaatttcaatcgtagtacacaaattggaatcaatgtgttcaggaaaaaaggaagcacgaaggaggatgtgataatcaccaat |
322 |
Q |
| |
|
||||||||||| |||||||||| |||||||| | ||||||| || |||||||||| || ||||||| | || |||||||| |
|
|
| T |
17887 |
gaatttcaatcttagtacacaatttggaatctacgtgttcaacaagaaaggaagcatgagagaggatgcggtattcaccaat |
17968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 41 - 322
Target Start/End: Complemental strand, 29270150 - 29269869
Alignment:
| Q |
41 |
atttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtc |
140 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||| || || |||||||||||||||||||||||| | ||||||||||||||||||| | |||| |
|
|
| T |
29270150 |
atttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtc |
29270051 |
T |
|
| Q |
141 |
atgggagatgtctagtggttgctcgcaccacagaatctgtcggttgttctaaagggcagtgagtaacggtatgctttgcagctcagttgaagagttatga |
240 |
Q |
| |
|
||| || | |||||| |||||||| || |||| |||| || ||||||| |||||||||||||||| | |||||||||||||||||||| || | | || |
|
|
| T |
29270050 |
atgcgacaagtctagaggttgctcacagcacataatccgtttgttgttcgaaagggcagtgagtaatgatatgctttgcagctcagttggagtgctttgt |
29269951 |
T |
|
| Q |
241 |
gaatttcaatcgtagtacacaaattggaatcaatgtgttcaggaaaaaaggaagcacgaaggaggatgtgataatcaccaat |
322 |
Q |
| |
|
||||||| ||| |||||||||| |||||||| | ||||||| || |||||||||| || ||||||| | || |||||||| |
|
|
| T |
29269950 |
gaatttccatcttagtacacaatttggaatctacgtgttcaataagaaaggaagcatgagagaggatgcggtattcaccaat |
29269869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 64725 - 64855
Alignment:
| Q |
47 |
gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatggga |
146 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| || || |||| ||||||||||||||||||| |||||||||||||||||||||| | ||||||| || |
|
|
| T |
64725 |
gcaacttttctctaacgaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatttgcattgtcatgcga |
64824 |
T |
|
| Q |
147 |
gatgtctagtggttgctcgcaccacagaatc |
177 |
Q |
| |
|
|||||||| | ||||||||| || |||||| |
|
|
| T |
64825 |
catgtctagagattgctcgcagcatagaatc |
64855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 171 - 361
Target Start/End: Complemental strand, 18692462 - 18692271
Alignment:
| Q |
171 |
cagaatctgtcggttgttctaaagggcagtgagtaacggtatgctttgcagctcagttgaagagttatgagaatttcaatcgtagtacacaaattggaat |
270 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||| | ||||||||||| |||||||| |||||| |||||||||||||| ||||| ||||||| |||| |
|
|
| T |
18692462 |
cagaatccgttggttgttcgaaagggcagtgagtattgatatgctttgcacctcagttggagagttttgagaatttcaatcttagtagacaaattagaat |
18692363 |
T |
|
| Q |
271 |
-caatgtgttcaggaaaaaaggaagcacgaaggaggatgtgataatcaccaatgctcatgtaaagagtaaaccagatgaaggtcagaacttg |
361 |
Q |
| |
|
|| |||||||| ||| ||| ||||| | || ||||||||||| ||| |||| || || |||||| ||| ||||||||| ||||||||| |
|
|
| T |
18692362 |
ccactgtgttcaagaagaaaaaaagcatggagcaggatgtgatattcatcaatccttatagaaagagaaaatcagatgaagaacagaacttg |
18692271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 33 - 229
Target Start/End: Original strand, 5083071 - 5083269
Alignment:
| Q |
33 |
tgttggttatttgcgcaacttttctct-aacca-aaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctat |
130 |
Q |
| |
|
||||||| |||| ||||||||||||| ||| | ||||||| |||| |||| || ||| ||||||||||| ||| |||| ||||||||| ||||||| | |
|
|
| T |
5083071 |
tgttggtaatttttgcaacttttctcttaactataaactaagcattcatttcttcttttactgtacattgacagaaaaccatctgtagttgtctggcttt |
5083170 |
T |
|
| Q |
131 |
ttttactgtcatgggagatgtctagtggttgctcgcaccacagaatctgtcggttgttctaaagggcagtgagtaacggtatgctttgcagctcagttg |
229 |
Q |
| |
|
|| | |||||| ||||||||||| ||| |||| |||||||||| || | ||||| |||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
5083171 |
ttgcattgtcatacgagatgtctagaggtggctcaatccacagaatccgtggattgtttgaaagggcagtgagtaatgatatgctttgcagctcagttg |
5083269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 18674333 - 18674282
Alignment:
| Q |
220 |
agctcagttgaagagttatgagaatttcaatcgtagtacacaaattggaatc |
271 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
18674333 |
agctcagttggagagttttgagaatttcaatcttagtagacaaattggaatc |
18674282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 18674490 - 18674446
Alignment:
| Q |
32 |
ttgttggttatttgcgcaacttttctctaaccaaaactaaacatt |
76 |
Q |
| |
|
|||||||| |||| | |||||||||||||||||||||||| |||| |
|
|
| T |
18674490 |
ttgttggtaatttacacaacttttctctaaccaaaactaagcatt |
18674446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 18718971 - 18718903
Alignment:
| Q |
161 |
gctcgcaccacagaatctgtcggttgttctaaagggcagtgagtaacggtatgctttgcagctcagttg |
229 |
Q |
| |
|
|||||||| |||| ||||| |||||||| || |||||||||||| | ||||||||||| |||||||| |
|
|
| T |
18718971 |
gctcgcactgcagattctgttggttgttcgaacgggcagtgagtattgatatgctttgcacctcagttg |
18718903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 313
Target Start/End: Complemental strand, 17989928 - 17989856
Alignment:
| Q |
241 |
gaatttcaatcgtagtacacaaattggaatcaatgtgttcaggaaaaaaggaagcacgaaggaggatgtgata |
313 |
Q |
| |
|
||||| ||||| |||||||||||| |||||| ||||||||| || ||| |||||||||||||||||||||| |
|
|
| T |
17989928 |
gaattccaatcttagtacacaaatgggaatccatgtgttcaataagaaaacaagcacgaaggaggatgtgata |
17989856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 871 - 829
Alignment:
| Q |
86 |
tttgactgtacattgtcaggaaactatctgtagtcatctggct |
128 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
871 |
tttgacagtacattgtcaggaaaccatctgtagtcgtctggct |
829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University