View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7428_low_18 (Length: 336)
Name: NF7428_low_18
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7428_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 13438985 - 13439125
Alignment:
| Q |
84 |
aatatactttgacaattttatttgcttacattggaaatcataacttattaatccaccatttttctatggttggtttcatcaaataagatgactt----at |
179 |
Q |
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| T |
13438985 |
aatatactttgacaattttatttgcttacattggaaatcataacttattaatccaccatttttctatggttggtttcattaaataagatgacttatagat |
13439084 |
T |
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| Q |
180 |
aaagaagaagttacactaagtaaaaacatctcattggtatg |
220 |
Q |
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| T |
13439085 |
aaagaagaagttacactaagtaaaaacatctcattggtatg |
13439125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 221 - 319
Target Start/End: Original strand, 13439179 - 13439277
Alignment:
| Q |
221 |
aattatcagctccaagactagcagtttcagcatcacttcttgaactttgggtggaatagcaaaatattattatcattagtaattaagatatatagttag |
319 |
Q |
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| T |
13439179 |
aattatcagctccaagactagcagtttctgcatcacttcttgaactttgggtggaatagcaaaatattattatcattagtaattaaaatatatagttag |
13439277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 98 - 222
Target Start/End: Original strand, 13437530 - 13437658
Alignment:
| Q |
98 |
attttatttgcttacattggaaatcataacttattaatccaccatttttctatggttggtttcatcaaataagatgactt----ataaagaagaagttac |
193 |
Q |
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| T |
13437530 |
attttatttgcttacattggaaatcataacttaatgatccaccaattttcaatggttgatttcattaagtaagatgatttatagataaagaagaagctac |
13437629 |
T |
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| Q |
194 |
actaagtaaaaacatctcattggtatgaa |
222 |
Q |
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| T |
13437630 |
actaagtaaaaacatctcattgttatgaa |
13437658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 13439304 - 13439344
Alignment:
| Q |
266 |
tttgggtggaatagcaaaatattattatcattagtaattaa |
306 |
Q |
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| T |
13439304 |
tttgggtgaaatagaaaaatattattatcattagtaattaa |
13439344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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