View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7428_low_19 (Length: 334)

Name: NF7428_low_19
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7428_low_19
NF7428_low_19
[»] chr4 (1 HSPs)
chr4 (19-324)||(22361916-22362224)
[»] chr2 (7 HSPs)
chr2 (81-294)||(39814908-39815121)
chr2 (81-192)||(39805623-39805734)
chr2 (81-192)||(39825987-39826098)
chr2 (81-192)||(39902548-39902659)
chr2 (81-192)||(39911006-39911117)
chr2 (81-192)||(39922149-39922260)
chr2 (81-192)||(39927845-39927956)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 22362224 - 22361916
Alignment:
Q  19 attttaaccatgatcttgctg---ggttcttattcatcttttctttttcatgcgttgtgtatgttagggatcaatgatggcaccacatgtgaatccaagt 115  Q
    |||||||||||||| ||||||   |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22362224 attttaaccatgatattgctgctgggttcttattcatcttttctatttcatgcattgtgtatgttagggatcaatgatggcaccacatgtgaatccaagt 22362125  T
Q  116 gcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaagcaatgcaatggaagcagaaatcaaagtaggagaca 215  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22362124 gcaacagagtataccatagtattaagaggttatggaagaattcagatactatttccaaacggaagcaatgcaatggaagcagaaatcaaagtaggagaca 22362025  T
Q  216 tattctacataccaagatactttcctttctgtcaaatagctgcaagaaatggacccttagagttctttggattcacaacctcatcaaaaaagagccatcc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22362024 tattctacataccaagatactttcctttctgtcaaatagctgcaagaaatggacccttagagttctttggattcacaacctcatcaaaaaagagctatcc 22361925  T
Q  316 acaggttct 324  Q
    |||| ||||    
T  22361924 acagtttct 22361916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 81 - 294
Target Start/End: Original strand, 39814908 - 39815121
Alignment:
Q  81 agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag 180  Q
    ||||||| |||||| |||| ||||| |||||||| |||||||| |||  |||||| |||||||||| ||| |||||||| ||| | |||||||| ||||     
T  39814908 agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtcttaagaggttctggtagaattcaaatagtgtttccaaatggaac 39815007  T
Q  181 caatgcaatggaagcagaaatcaaagtaggagacatattctacataccaagatactttcctttctgtcaaatagctgcaagaaatggacccttagagttc 280  Q
    ||||||||||||  || | || |||  ||||||  | ||||  ||||||||||||||| | || || ||||||||  |||| |||| |||  | || |||    
T  39815008 caatgcaatggacacacatataaaacaaggagatgttttctttataccaagatactttgcattttgccaaatagcatcaagcaatgaaccacttgatttc 39815107  T
Q  281 tttggattcacaac 294  Q
    ||||||||||||||    
T  39815108 tttggattcacaac 39815121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 81 - 192
Target Start/End: Original strand, 39805623 - 39805734
Alignment:
Q  81 agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag 180  Q
    ||||||| |||||| |||| ||||| |||||||| |||||||| |||  ||||||  ||||||||| ||| |||||||| ||| | |||||||| ||||     
T  39805623 agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac 39805722  T
Q  181 caatgcaatgga 192  Q
    ||||||||||||    
T  39805723 caatgcaatgga 39805734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 81 - 192
Target Start/End: Original strand, 39825987 - 39826098
Alignment:
Q  81 agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag 180  Q
    ||||||| |||||| |||| ||||| |||||||| |||||||| |||  ||||||  ||||||||| ||| |||||||| ||| | |||||||| ||||     
T  39825987 agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac 39826086  T
Q  181 caatgcaatgga 192  Q
    ||||||||||||    
T  39826087 caatgcaatgga 39826098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 81 - 192
Target Start/End: Original strand, 39902548 - 39902659
Alignment:
Q  81 agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag 180  Q
    ||||||| |||||| |||| ||||| |||||||| |||||||| |||  ||||||  ||||||||| ||| |||||||| ||| | |||||||| ||||     
T  39902548 agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac 39902647  T
Q  181 caatgcaatgga 192  Q
    ||||||||||||    
T  39902648 caatgcaatgga 39902659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 81 - 192
Target Start/End: Original strand, 39911006 - 39911117
Alignment:
Q  81 agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag 180  Q
    ||||||| |||||| |||| ||||| |||||||| |||||||| |||  ||||||  ||||||||| ||| |||||||| ||| | |||||||| ||||     
T  39911006 agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac 39911105  T
Q  181 caatgcaatgga 192  Q
    ||||||||||||    
T  39911106 caatgcaatgga 39911117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 81 - 192
Target Start/End: Original strand, 39922149 - 39922260
Alignment:
Q  81 agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag 180  Q
    ||||||| |||||| |||| ||||| |||||||| |||||||| |||  ||||||  ||||||||| ||| |||||||| ||| | |||||||| ||||     
T  39922149 agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac 39922248  T
Q  181 caatgcaatgga 192  Q
    ||||||||||||    
T  39922249 caatgcaatgga 39922260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 81 - 192
Target Start/End: Original strand, 39927845 - 39927956
Alignment:
Q  81 agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag 180  Q
    ||||||| |||||| |||| ||||| |||||||| |||||||| |||  ||||||  ||||||||| ||| |||||||| ||| | |||||||| ||||     
T  39927845 agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac 39927944  T
Q  181 caatgcaatgga 192  Q
    ||||||||||||    
T  39927945 caatgcaatgga 39927956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University