View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7428_low_20 (Length: 320)

Name: NF7428_low_20
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7428_low_20
NF7428_low_20
[»] chr7 (1 HSPs)
chr7 (1-297)||(28265522-28265818)


Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 28265522 - 28265818
Alignment:
Q  1 tgaatctcaatttactgttttctatgctcgattttcatctcagatttgtcaaatccatcaattgtgcgaaatattctgcatccagatttcaaacatttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28265522 tgaatctcaatttactgttttctatgctcgattttcatctcagatttgtcaaatccatcaattgtgcgaaatattctgcatccagatttcaaacatttat 28265621  T
Q  101 gtcaaattcgcaatttatctcacatttttcttccagattgtgttagctgctatgaatttagttgtattggataattattgatctctttagtgaagatatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28265622 gtcaaattcgcaatttatctcacatttttcttccagattgtgttagctgctatgaatttagttgtattggataattattgatctctttagtgaagatatc 28265721  T
Q  201 ttcattttcacgagttataatcttctaaattcatgttccagcttgaaatttgctgatacttcttttttccaattcacaacgcgaaagatcagcgaac 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28265722 ttcattttcacgagttataatcttctaaattcatgttccagcttgaaatttgctgatacttcttttttccaattcacaacgcgaaagatcagcgaac 28265818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University