View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7428_low_22 (Length: 284)
Name: NF7428_low_22
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7428_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 53561612 - 53561353
Alignment:
| Q |
18 |
aaaagaactattacccctccacacgtcattccaaaacctcgtaaccctcccgttgccaacattccaagacacctccgagttaaaccaatttcaccctcct |
117 |
Q |
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| T |
53561612 |
aaaagaactattacccctccacacgtcattccaaaacctcgtaaccctcccgttgccaacattcctagacacctccgagttaaaccaatttgaccctcct |
53561513 |
T |
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| Q |
118 |
ccatcgcccaacttagttacatctttccaccaccgcgaagcataggttgggcacacatagc-ccccgggcaacaaagatgcaccaacatcctcaccatat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
53561512 |
ccatcgcccaacttagttacatctttccaccaccgcgaagcataggttgggcacacatagccccccgggcaacaaagatgcaccaacatcctcaccatat |
53561413 |
T |
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| Q |
217 |
ttctcccttaaaacatccttccacatggagccacctttttgcaacatcctccacctccat |
276 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53561412 |
ttctccctcaaaacatccttccacatggagccacctttttgcaacatcctccacctccat |
53561353 |
T |
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