View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7428_low_25 (Length: 266)
Name: NF7428_low_25
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7428_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 19117479 - 19117241
Alignment:
| Q |
16 |
aaaacttcttggtggaccaattcagctttatgccaaaaagcaaaaccaagtttcacaagttattaaaggaaaagaagaaaacagctacataatttcaact |
115 |
Q |
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| T |
19117479 |
aaaacttcttggtggaccaattcagctttatgccaaaaagcaaaaccaagtttcacaagttattaaaggaaaagaagaaaacagctacataatttcaact |
19117380 |
T |
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| Q |
116 |
cctcttagtttcttgacatcatgcccccaaaacacaaattgtaaggctgcaaaatctattggttcatccaaaactattgatcttcctttgcctccagaat |
215 |
Q |
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| T |
19117379 |
cctcttagtttcttgatatcatgcccccaaaacacaaattgtaaggctacaaaacctattggttcatccaaaactattgatcttcctttgcctccagaat |
19117280 |
T |
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| Q |
216 |
ggggtttggcacctagtagctattatgtaccttttgttc |
254 |
Q |
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| T |
19117279 |
ggggtttggcacctagtagctattatgtaccttttgttc |
19117241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 29135199 - 29135376
Alignment:
| Q |
16 |
aaaacttcttggtggaccaattcagctttatgccaaaaagcaaaaccaagtttcacaagttattaaag-gaaaagaagaaaacagctacataatttcaac |
114 |
Q |
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| T |
29135199 |
aaaacttattgaaggaccgattcagctttattacaaaagtcaaaaccaa-tttcacaaattatctaagtgaaaagaagaaaacaattgtatcatatcaaa |
29135297 |
T |
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| Q |
115 |
tcctcttagtttcttgacatcatgcccccaaaacacaaattgtaaggctgcaaaatctattggttcatccaaaactatt |
193 |
Q |
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| T |
29135298 |
tacacttagtttcatgatatcatgccataaaatcacaaattgtaattctgcaaaatcagttggttcatctaaaactatt |
29135376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 28001691 - 28001755
Alignment:
| Q |
35 |
attcagctttatgccaaaaagcaaaaccaagtttcacaagttat-taaaggaaaagaagaaaaca |
98 |
Q |
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|||||||||||| |||||| |||||||||||||||||| |||| ||| ||||||||||||||| |
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| T |
28001691 |
attcagctttattacaaaaatcaaaaccaagtttcacaaattatctaagcgaaaagaagaaaaca |
28001755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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