View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7428_low_27 (Length: 259)
Name: NF7428_low_27
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7428_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 53454556 - 53454786
Alignment:
| Q |
14 |
agactgaaaaaatagaactaacaaatgcataaaatattcttttggcacaggtgggaactaactcagggcctaaattctgcaagaaaggttgaccactagg |
113 |
Q |
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| T |
53454556 |
agactgaaaaaatagaaccaacaaatgcataaaatattcttttggcacaggtggtaactaactcagggcctaaattctgcaagaaaggttgaccactagg |
53454655 |
T |
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| Q |
114 |
ctatggccttgagataacattaatagttatatattcaattggcattaagagagcaaacagcagactatccctcttaattccttctcagataaactatggc |
213 |
Q |
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| T |
53454656 |
ctatggccttgagataacattaataattatagattcaattggcattaagagagcaaagagcagactatccctcttaattccttctcagataaactatggc |
53454755 |
T |
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| Q |
214 |
cttgagataacattaaaaggtgtgtgctagt |
244 |
Q |
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| T |
53454756 |
cttgagataacattaaaaggtgtgtgctagt |
53454786 |
T |
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