View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7428_low_3 (Length: 725)

Name: NF7428_low_3
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7428_low_3
NF7428_low_3
[»] chr1 (2 HSPs)
chr1 (13-398)||(5927636-5928021)
chr1 (13-145)||(4342269-4342403)
[»] chr7 (1 HSPs)
chr7 (154-398)||(33937760-33938003)
[»] chr2 (1 HSPs)
chr2 (154-398)||(29842755-29842998)
[»] chr5 (2 HSPs)
chr5 (154-350)||(22811628-22811826)
chr5 (48-145)||(22811255-22811352)
[»] chr8 (2 HSPs)
chr8 (436-530)||(38833858-38833952)
chr8 (55-145)||(19644391-19644481)
[»] chr4 (5 HSPs)
chr4 (48-145)||(22694927-22695023)
chr4 (101-145)||(22715599-22715643)
chr4 (101-145)||(22989582-22989626)
chr4 (101-145)||(28949859-28949903)
chr4 (101-145)||(46954977-46955021)
[»] chr3 (2 HSPs)
chr3 (51-145)||(7009343-7009437)
chr3 (248-340)||(7231343-7231435)
[»] scaffold0009 (1 HSPs)
scaffold0009 (101-145)||(201485-201529)


Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 13 - 398
Target Start/End: Complemental strand, 5928021 - 5927636
Alignment:
Q  13 aatatcattaatatttcaagaagaaggaaaaaaca-aatcataactaaggtcaaggaaaacaaaagaaataaattgttttttaattaggcattttatcaa 111  Q
    |||||||||||||||||||||||||  |||| | | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5928021 aatatcattaatatttcaagaagaaaaaaaataaacaatcataactaaggtcaaggaaaacaaaagaaataaattgtttttttattaggcattttatcaa 5927922  T
Q  112 acacatcaaatgcaatgttatcaaaactgaattatgaaaactatcatatttgcattcaaattttgaaatgagttatgaattctgattagatggaaagtta 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  5927921 acacatcaaatgcaatgttatcaaaactgaattatgaaaactatcatatttgcattcgaattttgaaacgagttatgaattctgattagatggaaagtta 5927822  T
Q  212 tgaggtagatgaaaagcagtacaaatcaagggcaaaaaagagattctgatggaaggcaaacttgcagttgaagaatcgattttcaaaagctagcaatagc 311  Q
    ||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  5927821 tgagggaggtgaaaagcagtacaaatcaagggcaaaaaagagattttgatggaaggcaaacctgcagttgaagaatcgattttcagaagctagcaatagc 5927722  T
Q  312 agcttcacctaaaattgattttgagcagggaaccgtacgacatggtcatcacgttgggagagaaccaaacaacccaaaattgcttta 398  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  5927721 agcttcacctagaattgattttgagca-ggaaccgtaggacatcgtcatcacgtttggagagaaccaaacaacccaaaattgcttta 5927636  T

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Target: chr1; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 4342403 - 4342269
Alignment:
Q  13 aatatcattaatatttcaag--aagaaggaaaaaacaaatcataactaaggtcaaggaaaacaaaagaaataaattgttttttaattaggcattttatca 110  Q
    |||||||||||||||||| |  || ||  ||||||  ||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||    
T  4342403 aatatcattaatatttcaggcaaaaaaaaaaaaaaacaatcataactaaggttaaggaaaacaaaagaaataaattgttttttattcaggcattttatca 4342304  T
Q  111 aacacatcaaatgcaatgttatcaaaactgaatta 145  Q
    ||||||||||||||||||||||||||| |||||||    
T  4342303 aacacatcaaatgcaatgttatcaaaattgaatta 4342269  T

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Target: chr7 (Bit Score: 149; Significance: 3e-78; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 154 - 398
Target Start/End: Original strand, 33937760 - 33938003
Alignment:
Q  154 atcatatttgcattcaaattttgaaatgagttatgaattctgattagatggaaagttatgaggtagatgaaaagcagtacaaatcaagggcaaaaaagag 253  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| || |||||||||||||||||||||||||||||||||    
T  33937760 atcatatttgcattcaaattttgaaaggagttatgaattctgattagatggaaagtgacgagggaggtgaaaagcagtacaaatcaagggcaaaaaagag 33937859  T
Q  254 attctgatggaaggcaaacttgcagttgaagaatcgattttcaaaagctagcaatagcagcttcacctaaaattgattttgagcagggaaccgtacgaca 353  Q
    ||| ||||||||||||||| |||||||| |||||| ||||||| ||||||| ||||| |||||| |||| |||||||||| |||||| |||||||||| |    
T  33937860 attttgatggaaggcaaacctgcagttggagaatcaattttcagaagctaggaatagtagcttctcctagaattgattttcagcaggaaaccgtacgata 33937959  T
Q  354 tggtcatcacgttgggagagaaccaaacaacccaaaattgcttta 398  Q
     |   |||  |||||||||||||||||||||||||||||||||||    
T  33937960 -gagaatccagttgggagagaaccaaacaacccaaaattgcttta 33938003  T

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Target: chr2 (Bit Score: 137; Significance: 4e-71; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 154 - 398
Target Start/End: Complemental strand, 29842998 - 29842755
Alignment:
Q  154 atcatatttgcattcaaattttgaaatgagttatgaattctgattagatggaaagttatgaggtagatgaaaagcagtacaaatcaagggcaaaaaagag 253  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| || ||||||| |||| ||||||||||||||||| ||    
T  29842998 atcatatttgcattcaaattttgaaaggagttatgaattttgattagatggaaagtgatgagggaggtgaaaagtagtataaatcaagggcaaaaaaaag 29842899  T
Q  254 attctgatggaaggcaaacttgcagttgaagaatcgattttcaaaagctagcaatagcagcttcacctaaaattgattttgagcagggaaccgtacgaca 353  Q
    ||| ||||||||||||||| |||||||| |||||| ||||||||||||||| |||||||||||| |||| |||||||||| |||||  |||||||||| |    
T  29842898 attttgatggaaggcaaacctgcagttggagaatcaattttcaaaagctaggaatagcagcttctcctagaattgattttcagcagaaaaccgtacgata 29842799  T
Q  354 tggtcatcacgttgggagagaaccaaacaacccaaaattgcttta 398  Q
     |   |||   ||||||||||||||||||||||||||||||||||    
T  29842798 -gagaatccacttgggagagaaccaaacaacccaaaattgcttta 29842755  T

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Target: chr5 (Bit Score: 123; Significance: 8e-63; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 154 - 350
Target Start/End: Original strand, 22811628 - 22811826
Alignment:
Q  154 atcatatttgcattcaaattttgaaatgagttatgaattctgattagatggaaagttatgaggtagatgaaaagcagtacaaatcaagggc-aaaaaaga 252  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |  |||||||||| ||||||||||||| ||||||||    
T  22811628 atcatatttgcattcaaattttgaaaggagttatgaattctgattagatggaaagttatgagggatgtgaaaagcagcacaaatcaagggcaaaaaaaga 22811727  T
Q  253 gattctgatggaaggcaaacttgcagttgaag-aatcgattttcaaaagctagcaatagcagcttcacctaaaattgattttgagcagggaaccgtacg 350  Q
    |||| ||||||||||||||| || |||||||| |||||||||||||||||||  ||||| ||||||||||| |||||| |||||| |||||| ||||||    
T  22811728 gattttgatggaaggcaaacctggagttgaagaaatcgattttcaaaagctatgaatagaagcttcacctagaattgagtttgaggagggaaacgtacg 22811826  T

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Target: chr5; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 22811255 - 22811352
Alignment:
Q  48 aatcataactaaggtcaaggaaaacaaaagaaataaattgttttttaattaggcattttatcaaacacatcaaatgcaatgttatcaaaactgaatta 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22811255 aatcataactaaggtcaaggaaaacaaaagaaataaattgttttttatttaggcattttatcaaacacatcaaatgcaatgttatcaaaattgaatta 22811352  T

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Target: chr8 (Bit Score: 87; Significance: 3e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 436 - 530
Target Start/End: Original strand, 38833858 - 38833952
Alignment:
Q  436 aagttaagagatgagaaaacaaccataatattcctacttgtagtcatttattttaccttcttccaaaatcttgtgttcgatctttgttcttgata 530  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38833858 aagttaagagatcagaaaacaaccataatattcctacttgtagtcatttattttaccttcttccaaaatcttgcgttcgatctttgttcttgata 38833952  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 19644481 - 19644391
Alignment:
Q  55 actaaggtcaaggaaaacaaaagaaataaattgttttttaattaggcattttatcaaacacatcaaatgcaatgttatcaaaactgaatta 145  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19644481 actaaggtcaaggaaaacaaaagaaataaattgttttttatttaggcattttatcaaacacatcaaatgcaatgttatcaaaattgaatta 19644391  T

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Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 22695023 - 22694927
Alignment:
Q  48 aatcataactaaggtcaaggaaaacaaaagaaataaattgttttttaattaggcattttatcaaacacatcaaatgcaatgttatcaaaactgaatta 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22695023 aatcataactaaggtcaaggaaaacaaaagaaataaattgttttt-atttaggcattttatcaaacacatcaaatgcaatgttatcaaaattgaatta 22694927  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 22715599 - 22715643
Alignment:
Q  101 cattttatcaaacacatcaaatgcaatgttatcaaaactgaatta 145  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||    
T  22715599 cattttatcaaacacatcaaatgcattgttatcataactgaatta 22715643  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 22989626 - 22989582
Alignment:
Q  101 cattttatcaaacacatcaaatgcaatgttatcaaaactgaatta 145  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||    
T  22989626 cattttatcaaacacatcaaatgcattgttatcataactgaatta 22989582  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 28949859 - 28949903
Alignment:
Q  101 cattttatcaaacacatcaaatgcaatgttatcaaaactgaatta 145  Q
    ||||||||| ||||||||||||||| |||||||| ||||||||||    
T  28949859 cattttatctaacacatcaaatgcattgttatcataactgaatta 28949903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 46955021 - 46954977
Alignment:
Q  101 cattttatcaaacacatcaaatgcaatgttatcaaaactgaatta 145  Q
    ||||||||||||||||||||||||| |||||| | ||||||||||    
T  46955021 cattttatcaaacacatcaaatgcattgttatgataactgaatta 46954977  T

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Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 7009437 - 7009343
Alignment:
Q  51 cataactaaggtcaaggaaaacaaaagaaataaattgttttttaattaggcattttatcaaacacatcaaatgcaatgttatcaaaactgaatta 145  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  7009437 cataactaaggtcaaggaaaacaaaagaaatagattgttttttatttaggcattttatcaaacacatcagatgcaatgttatcaaaattgaatta 7009343  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 248 - 340
Target Start/End: Original strand, 7231343 - 7231435
Alignment:
Q  248 aaagagattctgatggaaggcaaacttgcagttgaagaa-tcgattttcaaaagctagcaatagcagcttcacctaaaattgattttgagcagg 340  Q
    ||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||  |||||| |||||||||| | |||| |||| |||||    
T  7231343 aaagagattttgatggaaggcaaact-gcagttgaagaaatcgattttcaaaagctatgaatagctgcttcacctagatttgagtttgggcagg 7231435  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 201485 - 201529
Alignment:
Q  101 cattttatcaaacacatcaaatgcaatgttatcaaaactgaatta 145  Q
    ||||||||| ||||||||||||||| |||||||| ||||||||||    
T  201485 cattttatctaacacatcaaatgcattgttatcataactgaatta 201529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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