View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7428_low_30 (Length: 240)
Name: NF7428_low_30
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7428_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 37188191 - 37188402
Alignment:
| Q |
11 |
gaagaatatacaacccatcaatgtgtatatatacgtaacataaccccatatttcatttcattcaccaacaagagcttagacaaattaagctacctttgct |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37188191 |
gaagaaaatacaacccatcaatgtgtatatatacgtaacataaccccatatttcatttcattcaccaacaagagcttagacaaattaagctacctttgct |
37188290 |
T |
|
| Q |
111 |
agaaacataaaagctaaagagaaaccaattaagcagaaaatgtcttttgatcaaaagacacgtgaagctgatcgtatctatgatgaatttgaaccaccct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37188291 |
agaaacataaaagctaaagagaaaccaattaagcagaaaatgtcttttgatcaaaagacacgtgaagctgatcgtatctatgatgaatttgaaccatcct |
37188390 |
T |
|
| Q |
211 |
ctgattgggatc |
222 |
Q |
| |
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|||||||||||| |
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| T |
37188391 |
ctgattgggatc |
37188402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 37893088 - 37893299
Alignment:
| Q |
11 |
gaagaatatacaacccatcaatgtgtatatatacgtaacataaccccatatttcatttcattcaccaacaagagcttagacaaattaagctacctttgct |
110 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37893088 |
gaagaaaatataacccatcaatgtgtatatatacgtaacataaccccatatttcatttcattcaccaacaagagcttagacaaattaagctacctttgct |
37893187 |
T |
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| Q |
111 |
agaaacataaaagctaaagagaaaccaattaagcagaaaatgtcttttgatcaaaagacacgtgaagctgatcgtatctatgatgaatttgaaccaccct |
210 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37893188 |
agaaacataaaagctaaagagaaaccaattaagcagaaaatgtcttttgatcaaaagacacgtgaagctgatcgtatctatgatgaatttgaaccaccct |
37893287 |
T |
|
| Q |
211 |
ctgattgggatc |
222 |
Q |
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|||||||||||| |
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| T |
37893288 |
ctgattgggatc |
37893299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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