View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7428_low_31 (Length: 238)
Name: NF7428_low_31
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7428_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2321678 - 2321928
Alignment:
| Q |
1 |
tgttgtgtgaaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtggatttctcatatggtgggattttgtttcatac |
100 |
Q |
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| T |
2321678 |
tgttgtgtgaaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtggatttctcatatggtcggattttgtttcatac |
2321777 |
T |
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| Q |
101 |
aat--------------acaatgatc--ccttacttcttatatatcttgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactt |
184 |
Q |
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| T |
2321778 |
aatgatcccttatgcatacattcatatgccttacttcttatatatcttgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactt |
2321877 |
T |
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| Q |
185 |
tcaatgtataaaaaatatgatcttgtttttgtaatatcaaagttgttttat |
235 |
Q |
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| T |
2321878 |
tcaatgtataaaaaatatgatcttgtttttgtaatatcaaagttgttttat |
2321928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 2294366 - 2294464
Alignment:
| Q |
1 |
tgttgtgtgaaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtggatttctcatatggtgggattttgtttcata |
99 |
Q |
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| T |
2294366 |
tgttgtgtgaaccaccctagattctctgcttgagaatgtcataacacagcaggggagtattatatgtggatttgtcatatggtgggattttgtttcata |
2294464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 2303977 - 2304046
Alignment:
| Q |
4 |
tgtgtgaaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtggattt |
73 |
Q |
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| T |
2303977 |
tgtgtgaaccactctagattctctgcttgagaatgtcataacacagcaaagaaatattatatgtggattt |
2304046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 2294512 - 2294601
Alignment:
| Q |
119 |
ttcttatatatcttgtttcttgtataaaataaaacat-gtctgtcattcttgtaagtcaagatactttcaatgtataaaaaatatgatctt |
208 |
Q |
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| T |
2294512 |
ttcttatatatcttgtttcctgtataaataaaaactttgcctgtcattcttgtaagtcaagatactttcattgta-aaaatatatgatctt |
2294601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 2339306 - 2339375
Alignment:
| Q |
119 |
ttcttatatatcttgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactttcaat |
189 |
Q |
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| T |
2339306 |
ttcttatatatctcgtttcttgtataaaataaaacatgtttggcattctggtaag-caagatactttcaat |
2339375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 2304241 - 2304278
Alignment:
| Q |
119 |
ttcttatatatcttgtttcttgtataaaataaaacatg |
156 |
Q |
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| T |
2304241 |
ttcttatatatcttgtttcttgtataaaataaaacatg |
2304278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 2331412 - 2331484
Alignment:
| Q |
119 |
ttcttatatatcttgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactttcaatgt |
191 |
Q |
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| T |
2331412 |
ttcttacatatcttgtttcttatataaaataaaacatgcatgaccttcttgcaagccaagatacattcaatgt |
2331484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 2327566 - 2327664
Alignment:
| Q |
1 |
tgttgtgtgaaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtggatttctcata-tggtgggattttgtttcata |
99 |
Q |
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| T |
2327566 |
tgttgtgtgaaccatcctagattctct-cttggcaatgtcataac---acagcggaatattatatgtagatttgtcacattggtaagattttgcttcata |
2327661 |
T |
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