View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7428_low_35 (Length: 218)
Name: NF7428_low_35
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7428_low_35 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 38703919 - 38704136
Alignment:
| Q |
1 |
cacgttcagtaaattaacttttctagcatcccgccatgatttttgtgaagcaccaaatttgcaggattaggtaaacccgtggtatgatttttgtgatgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38703919 |
cacgttcagtaaattaacttttctagcatcccgccatgatttttgtgaagcaccaaatttgcaggattaggtaaacccgtggtatgatttttgtgatgca |
38704018 |
T |
|
| Q |
101 |
ccaacaccacatgctaaagctttttgggcaccctttcaattttgatatctttttgctttatttctctaatttctttctagattatagtttcagttatcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38704019 |
ccaacaccacatgctaaagctttttgggcaccctttcaattttgatatcattttgctttatttctctaatttctttctagattatagtttcagttatcaa |
38704118 |
T |
|
| Q |
201 |
acaaggttagcattcaca |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
38704119 |
acaaggttagcattcaca |
38704136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University