View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7428_low_39 (Length: 211)
Name: NF7428_low_39
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7428_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 7488504 - 7488311
Alignment:
| Q |
1 |
tctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcagaaccccacctttctgaaaaggaggcacataaacatgtctgac |
100 |
Q |
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| T |
7488504 |
tctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcagaaccccacctttctgaaaaggaggcacataaacatgtctgat |
7488405 |
T |
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| Q |
101 |
agtcctaatctcatgatccttcatgaaacaaaaccctatgtaactcttctctcatgtgacaccgtaatacacatcaaatccctcttttccaaca |
194 |
Q |
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| T |
7488404 |
agtcctaatctcatgatccttcatgaaacaaaaccctatgtaactcttctctcatgtcacaccgtaatacacatcaaatccctcttttccaaca |
7488311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 194
Target Start/End: Original strand, 6943540 - 6943732
Alignment:
| Q |
2 |
ctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcagaaccccacctttctgaaaaggaggcacataaacatgtctgaca |
101 |
Q |
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| T |
6943540 |
ctaaagtcattgatgcttttcagatgtgttcaacgatcttggaatgttcttgttcagagccctgcctttctgaaacggcggcacatgaatatgcatgata |
6943639 |
T |
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| Q |
102 |
gtcctaatctcatgatccttcatgaaacaaaaccctatgtaactcttctctcatgtgacaccgtaatacacatcaaatccctcttttccaaca |
194 |
Q |
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| T |
6943640 |
gtcctagtctcatgatccttaataaaaaacaaaattatgtaacccttctctcatgtgacaacctaatacacatcaaatcccccttttccaaca |
6943732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 7873181 - 7873332
Alignment:
| Q |
1 |
tctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcagaaccccacctttctgaaaaggaggcacataaacatgtctgac |
100 |
Q |
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| T |
7873181 |
tctaaagtcattgattcgttttagatgtgttgaacgttcttggaatgatcttattcagaaacctacctttatgaaaagaaggcagatgaacatgtttgat |
7873280 |
T |
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| Q |
101 |
agtcctaatctcatgatccttcatgaaacaaaaccctatgtaactcttctctcat |
155 |
Q |
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| T |
7873281 |
agcc---agctcttgatccttaacaaaaaagaaccctatgtaacccttctctcat |
7873332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 7475638 - 7475563
Alignment:
| Q |
3 |
taaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcagaaccccacctttctgaaaag |
78 |
Q |
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| T |
7475638 |
taaagtcattgatgagctttagacttgttcaacgttcttggaatgatcttattcagacccccacctttctgaaaag |
7475563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 7475564 - 7475474
Alignment:
| Q |
101 |
agtcctaatctcatgatccttcatgaaacaaaaccctatgtaactcttctctcatgtgacaccgtaatacacatcaaatccctcttttcca |
191 |
Q |
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| T |
7475564 |
agtcataatctcataatcctttatgaagaacaaccctatataacccttctctcacgtgacaacctaatgcacatcaaatcccccttttcca |
7475474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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