View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7428_low_4 (Length: 680)

Name: NF7428_low_4
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7428_low_4
NF7428_low_4
[»] chr2 (1 HSPs)
chr2 (19-671)||(42124004-42124656)


Alignment Details
Target: chr2 (Bit Score: 649; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 19 - 671
Target Start/End: Original strand, 42124004 - 42124656
Alignment:
Q  19 atgtttgataccatgttcttgtcaatgttaatgctggtgtcgctttctttttcagcaatggttctttttcaggtaatggagctgatgatgctattggaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42124004 atgtttgataccatgttcttgtcaatgttaatgctggtgtcgctttctttttcagcaatggttctttttcaggtaatggagctgatgatgctattggaca 42124103  T
Q  119 gcaggacaagtcaaccttaacattggattgttgtacaaggtttctccaagcttctgggagtggctgtctattgcgcacgtgctgacatatctcatagatc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42124104 gcaggacaagtcaaccttaacattggattgttgtacaaggtttctccaagcttctgggagtggctgtctattgcgcacgtgctgacatatctcatagatc 42124203  T
Q  219 aatgaacggccgtgatcaattgaagcactttgtgtgctggaagtagctgtaattgtatccaactcattgcttttaagataaggattaaactcaagctttt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42124204 aatgaacggccgtgatcaattgaagcactttgtgtgctggaagtagctgtaattgtatccaactcattgcttttaagataaggattaaactcaagctttt 42124303  T
Q  319 gtgaatcttccataggaatattttcattgaggttaatctctccaacatcagtgaaagggaattcattttcatcccatggtttagtacaatccaatgcaac 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42124304 gtgaatcttccataggaatattttcattgaggttaatctctccaacatcagtgaaagggaattcattttcatcccatggtttagtacaatccaatgcaac 42124403  T
Q  419 ctcgcggccttgtgtatcgtctggaactggtcttacttgaatttgaaaaacgtaagaaactccattggaggaactaacacggttttgaaaatcattagca 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42124404 ctcgcggccttgtgtatcgtctggaactggtcttacttgaatttgaaaaacgtaagaaactccattggaggaactaacacggttttgaaaatcattagca 42124503  T
Q  519 aggaaaagcaaaggacgtgaatcattttcatctctagcaattgcacctgtctctggtggcagaatccctgtcggattaactttacctttgtcttcactga 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42124504 aggaaaagcaaaggacgtgaatcattttcatctctagcaattgcacctgtctctggtggcagaatccctgtcggattaactttacctttgtcttcactga 42124603  T
Q  619 tgctggtgtcatgaggccttaacttgaatttcacatacatttgatgtccatct 671  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42124604 tgctggtgtcatgaggccttaacttgaatttcacatacatttgttgtccatct 42124656  T

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