View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7428_low_41 (Length: 210)
Name: NF7428_low_41
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7428_low_41 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 31726857 - 31726648
Alignment:
| Q |
1 |
ttttttcttaaatgattcgtcatttggttaaacttattaatcatttgagttcaattgtttgattaatcaattcttacgtcgtttttgatgtgtctcatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||| |||||||||| ||||||| |||||||| ||||| |
|
|
| T |
31726857 |
ttttttcttaaatgattcgtcatttgattaaacttattaatcatttaaattcaattgtttgattaaccaattcttacatcgttttcgatgtgtcacatat |
31726758 |
T |
|
| Q |
101 |
gaagaagaacaacacgtacactttggtgccttggactgtccttcctttccacttgcaatgaatctgccaaactacctcacctacatgacaccacaaagca |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31726757 |
gaagaacaacaacacgtacactttggtgccttggattgtccttcctttccacttgcaatgaatctgccaaactacctcacctacatgacaccacaaagca |
31726658 |
T |
|
| Q |
201 |
attatgctca |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
31726657 |
attatgctca |
31726648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 43497073 - 43497114
Alignment:
| Q |
14 |
gattcgtcatttggttaaacttattaatcatttgagttcaat |
55 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||||||||||| |
|
|
| T |
43497073 |
gattcgtcatttggtgaaacttattaataacttgagttcaat |
43497114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 43433327 - 43433372
Alignment:
| Q |
11 |
aatgattcgtcatttggttaaacttattaatcatttgagttcaatt |
56 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| |||| |||| |
|
|
| T |
43433327 |
aatgattcgtcatttcgtaaaacttattaatcatttaagtttaatt |
43433372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University