View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7428_low_9 (Length: 587)
Name: NF7428_low_9
Description: NF7428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7428_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 19 - 575
Target Start/End: Complemental strand, 6061023 - 6060467
Alignment:
| Q |
19 |
tttgtaaatacacatattagcccctcaagttattcacacaaaaattatcccaactccaatttacattcctgaaatcatggcagaagcagtgattggtgga |
118 |
Q |
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| T |
6061023 |
tttgtaaatacacatattagcccctcaagttattcacacaaaaattatcccaactccaatttacattcctgaaatcatggcagaagcagtgattggtgga |
6060924 |
T |
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| Q |
119 |
gctttcctctctgctttctttgatgttgtcttcaaaaagttgacatcaccagaagttgctaatttgatccttggaaacaaacttgacaagaaattgcttc |
218 |
Q |
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| T |
6060923 |
gctttcctctctgctttctttgatgttgtcttcaaaaggctggcatcacctgaagttgctaatttgatccttggaaacaaacttgacaagaaattgcttc |
6060824 |
T |
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| Q |
219 |
agaggctcgagacaactttgagagtggttagagctgtgcttaatgatgctgagaagaaacaaaccagggattctgatgtcaacaattggctcaatgatct |
318 |
Q |
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| T |
6060823 |
agaggctcgagacaactttgagagtggttagagctgtgcttaatgatgctgagaagaaacaaaccagggattctgatgtcaacaactggctcaatgatct |
6060724 |
T |
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| Q |
319 |
caaagatgctgtatatgtagctgttgacttattggatgaagtttcgacaaaaactgtgattcaaaaagaggtaactaatctcttttcgcgctttttcaat |
418 |
Q |
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| T |
6060723 |
caaagatgctgtctatgtagctgatgacttattggatgaagtttcgacaaaaactgtgattcaaaaagaggtaactaatctcttttcgcgctttttcaat |
6060624 |
T |
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| Q |
419 |
gtgcaagatagggttatggttagtatgtttgaagatatagttgagagactagaatatatcttgaaactcaaagacagtcttgaactcaaagagattgtag |
518 |
Q |
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| T |
6060623 |
gtgcaagataggggtatggttagtaagtttgaagatatagttgagagactagaatatattttgaaactcaaagacagtcttgaactcaaagagattgtag |
6060524 |
T |
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| Q |
519 |
tggagaatttgtcatataaaactccatcaacatctctccaagacggatcacgtgtgt |
575 |
Q |
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| T |
6060523 |
tggagaatttgtcatataaaactccatcaacatctctccaagacgaatctcgtgtgt |
6060467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 355
Target Start/End: Original strand, 41932576 - 41932641
Alignment:
| Q |
290 |
tctgatgtcaacaattggctcaatgatctcaaagatgctgtatatgtagctgttgacttattggat |
355 |
Q |
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| T |
41932576 |
tctgctgttaacaaatggctcgatgatctcaaagatgctgtctatgttgctgatgacattttggat |
41932641 |
T |
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