View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7429_high_10 (Length: 407)

Name: NF7429_high_10
Description: NF7429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7429_high_10
NF7429_high_10
[»] chr4 (4 HSPs)
chr4 (1-230)||(54239166-54239398)
chr4 (292-392)||(54239460-54239560)
chr4 (297-392)||(18490366-18490461)
chr4 (292-392)||(34943586-34943686)
[»] chr8 (6 HSPs)
chr8 (292-392)||(2262598-2262698)
chr8 (297-392)||(15081429-15081524)
chr8 (297-392)||(9295192-9295287)
chr8 (302-392)||(38082222-38082315)
chr8 (159-233)||(15081296-15081370)
chr8 (292-388)||(12310715-12310811)
[»] chr6 (2 HSPs)
chr6 (304-392)||(27142612-27142700)
chr6 (292-376)||(8568741-8568825)
[»] chr1 (6 HSPs)
chr1 (292-392)||(50005262-50005363)
chr1 (292-392)||(50335747-50335848)
chr1 (292-376)||(11923744-11923828)
chr1 (296-392)||(28260289-28260385)
chr1 (299-390)||(22169873-22169965)
chr1 (337-389)||(45085643-45085695)
[»] chr3 (3 HSPs)
chr3 (159-229)||(33528465-33528535)
chr3 (292-392)||(1151056-1151156)
chr3 (294-384)||(33528308-33528398)
[»] scaffold0154 (1 HSPs)
scaffold0154 (298-375)||(28891-28967)
[»] chr5 (4 HSPs)
chr5 (355-392)||(15385090-15385127)
chr5 (292-388)||(35160867-35160963)
chr5 (292-385)||(36844473-36844566)
chr5 (292-376)||(7775272-7775355)
[»] chr2 (2 HSPs)
chr2 (299-392)||(5841165-5841257)
chr2 (304-383)||(3273414-3273493)
[»] chr7 (2 HSPs)
chr7 (302-392)||(22572524-22572614)
chr7 (56-100)||(11737531-11737575)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 8e-68; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 54239166 - 54239398
Alignment:
Q  1 cattaacgaatcataaacatgaagatgtgaatttggcatattgccgtcatgtattga---tgaagtagcgcgcaaaaaatgctcaataaaaatagtgtag 97  Q
    |||||||||||||||| |||||| ||||||  |||||| |||| |  ||||||| ||   ||||||  ||||||| ||||||||||| ||||||||||||    
T  54239166 cattaacgaatcataatcatgaatatgtgatgttggcaaattgactgcatgtatcgaagatgaagtgacgcgcaagaaatgctcaatgaaaatagtgtag 54239265  T
Q  98 atttgacattcgaagttggattgacccaaattacacattttcaaaaagcctagaaactaatgagcataacacatcactttgccataacgtagcggtgaat 197  Q
    |||||||||||||||| |||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  54239266 atttgacattcgaagtcggattgactcaaattatacattttcagaaagcctagaaactaacgagcataacacatcattttgccataacttagcggtgaat 54239365  T
Q  198 ttagccattcgaaatcatctgaatgtccaaaat 230  Q
    ||||||||||||||||||||||| | |||||||    
T  54239366 ttagccattcgaaatcatctgaaggcccaaaat 54239398  T

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Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 292 - 392
Target Start/End: Original strand, 54239460 - 54239560
Alignment:
Q  292 cggcccattagagtttgttatttccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattatcgagaacttttctcaa 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  54239460 cggcccattagagtttgttatttccataatatttaaacaaaactttggtagcctaagatacagtttttcaatcaataaaattatcgagaacttttctcaa 54239559  T
Q  392 t 392  Q
    |    
T  54239560 t 54239560  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 297 - 392
Target Start/End: Original strand, 18490366 - 18490461
Alignment:
Q  297 cattagagtttgttatttccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattatcgagaacttttctcaat 392  Q
    |||||||||||||| ||||| |||||||||||| |||| ||||||| |||||| | ||||||||| ||||||||||||||||||||||||||||||    
T  18490366 cattagagtttgttttttccttaatatttaaactaaacattggtagtctaagagatagtttttcattcaataaaattatcgagaacttttctcaat 18490461  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 34943686 - 34943586
Alignment:
Q  292 cggcccattagagtttgttatttccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattatcgagaacttttctcaa 391  Q
    ||||||||| ||||||||||||||| || |||||||   |||  || ||||||||||| ||| ||||| | ||||||||||||| |||||| ||| ||||    
T  34943686 cggcccatttgagtttgttatttccgtagtatttaagttaaatgttcgtagcctaagagaaaattttttattcaataaaattatagagaacatttatcaa 34943587  T
Q  392 t 392  Q
    |    
T  34943586 t 34943586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 292 - 392
Target Start/End: Original strand, 2262598 - 2262698
Alignment:
Q  292 cggcccattagagtttgttatttccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattatcgagaacttttctcaa 391  Q
    |||||||||||  |||||||||||| || |||||||||| |||||| |||| |||||||  ||||||||| |||||||||| || |||||||||||||||    
T  2262598 cggcccattaggatttgttatttccctagtatttaaacataactttcgtagtctaagatgcagtttttcattcaataaaatcatggagaacttttctcaa 2262697  T
Q  392 t 392  Q
    |    
T  2262698 t 2262698  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 392
Target Start/End: Original strand, 15081429 - 15081524
Alignment:
Q  297 cattagagtttgttatttccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattatcgagaacttttctcaat 392  Q
    ||||||||||||||||||   || ||||||||||||||||| |||| ||||||   ||||||||  ||||||||||||||||||||||||||||||    
T  15081429 cattagagtttgttatttttctagtatttaaacaaaactttcgtagtctaagaggcagtttttccttcaataaaattatcgagaacttttctcaat 15081524  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 297 - 392
Target Start/End: Original strand, 9295192 - 9295287
Alignment:
Q  297 cattagagtttgttatttccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattatcgagaacttttctcaat 392  Q
    |||||| ||||||||||||  || ||||||||| ||||||| ||||  | ||| | |||||| || ||||||||||||||||||||||||||||||    
T  9295192 cattagggtttgttatttctctagtatttaaactaaacttttgtagtttcagagacagttttacattcaataaaattatcgagaacttttctcaat 9295287  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 392
Target Start/End: Complemental strand, 38082315 - 38082222
Alignment:
Q  302 gagtttgttatttcca-taatatttaaacaaaactttggtagcctaaga-taaagtttttcaatcaat-aaaattatcgagaacttttctcaat 392  Q
    |||||||||||||||  || |||||||||| |||||| |||||||||||   |  ||||||| ||||| |||||||||||||||||||||||||    
T  38082315 gagtttgttatttcctctagtatttaaacataactttcgtagcctaagaggcacttttttcattcaataaaaattatcgagaacttttctcaat 38082222  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 15081296 - 15081370
Alignment:
Q  159 gagcataacacatcactttgccataacgtagcggtgaatttagccattcgaaatcatctgaatgtccaaaattgc 233  Q
    |||||||||||||  || |||||| | | || |||||||||||||||| ||| ||||||||| | ||||||||||    
T  15081296 gagcataacacattgctctgccatgatgcaggggtgaatttagccatttgaagtcatctgaaggcccaaaattgc 15081370  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 388
Target Start/End: Original strand, 12310715 - 12310811
Alignment:
Q  292 cggcccattagagtttgttatttccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattatcgagaacttttct 388  Q
    ||||||||| | ||||||||| ||  |  ||||||||| ||||||| |||||||||||   |  |||||| ||||||||| |||||| |||||||||    
T  12310715 cggcccattggggtttgttatatctctcgtatttaaactaaactttcgtagcctaagaggcaacttttcattcaataaaaatatcgataacttttct 12310811  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 304 - 392
Target Start/End: Complemental strand, 27142700 - 27142612
Alignment:
Q  304 gtttgttatttccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattatcgagaacttttctcaat 392  Q
    ||||||||||||| || |||||||||| |||||| |||||||||||   ||||||||| |||||||||||||||| |||||||||||||    
T  27142700 gtttgttatttccctagtatttaaacagaactttcgtagcctaagaggcagtttttcattcaataaaattatcgaaaacttttctcaat 27142612  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 376
Target Start/End: Complemental strand, 8568825 - 8568741
Alignment:
Q  292 cggcccattagagtttgttatttccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattatc 376  Q
    |||| |||||||||||||||||||| || ||||||| | |||| || ||||||||||| | |||||| || ||||||||||||||    
T  8568825 cggctcattagagtttgttatttccctagtatttaagctaaacattcgtagcctaagagacagttttccattcaataaaattatc 8568741  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 50005363 - 50005262
Alignment:
Q  292 cggcccattagagtttgttattt-ccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattatcgagaacttttctca 390  Q
    |||||| || ||||| ||||||| || || |||||||||| |||||| ||||||||||| | |  |||||| ||||||||||||||||||||||||||||    
T  50005363 cggcccgttcgagttcgttattttccctattatttaaacagaactttcgtagcctaagagacaccttttcattcaataaaattatcgagaacttttctca 50005264  T
Q  391 at 392  Q
    ||    
T  50005263 at 50005262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 392
Target Start/End: Original strand, 50335747 - 50335848
Alignment:
Q  292 cggcccattagagttt-gttatttccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattatcgagaacttttctca 390  Q
    |||||||||||||||| ||||||||| || ||||||| |  ||| || |||| |||||||| ||||||||| | ||||||||||| ||||||||||||||    
T  50335747 cggcccattagagttttgttatttccctagtatttaagcttaacatttgtagtctaagatacagtttttcatttaataaaattattgagaacttttctca 50335846  T
Q  391 at 392  Q
    ||    
T  50335847 at 50335848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 376
Target Start/End: Original strand, 11923744 - 11923828
Alignment:
Q  292 cggcccattagagtttgttatttccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattatc 376  Q
    |||| |||||||||||||||||||| || ||||||| | |||| || ||||||||||| | |||||| || ||||||||||||||    
T  11923744 cggctcattagagtttgttatttccctagtatttaagctaaacattcgtagcctaagagacagttttccattcaataaaattatc 11923828  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 392
Target Start/End: Complemental strand, 28260385 - 28260289
Alignment:
Q  296 ccattagagtttgttatttccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattatcgagaacttttctcaat 392  Q
    ||||||| ||||||| ||||| || ||||||||| ||||||| ||||||||| |   |||||| || ||||||||| |||||||||||||| |||||    
T  28260385 ccattagggtttgttctttccctagtatttaaactaaactttcgtagcctaaaaggcagttttgcattcaataaaaatatcgagaacttttttcaat 28260289  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 22169873 - 22169965
Alignment:
Q  299 ttagagtttgttatttccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaat-aaaattatcgagaacttttctca 390  Q
    |||||||||||||||| | || ||||||||| |||| || |||||||||||   ||||||| | ||||| |||||||| ||||||||||||||    
T  22169873 ttagagtttgttattttcctagtatttaaactaaacattagtagcctaagaggtagtttttgattcaataaaaattatagagaacttttctca 22169965  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 389
Target Start/End: Original strand, 45085643 - 45085695
Alignment:
Q  337 tggtagcctaagataaagtttttcaatcaataaaattatcgagaacttttctc 389  Q
    |||||||||||||   ||||||||| |||||||| |||| |||||||||||||    
T  45085643 tggtagcctaagaggcagtttttcattcaataaacttattgagaacttttctc 45085695  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 33528535 - 33528465
Alignment:
Q  159 gagcataacacatcactttgccataacgtagcggtgaatttagccattcgaaatcatctgaatgtccaaaa 229  Q
    |||||||| ||||| ||| ||||| |||||  | |||||||||||||||||| ||||||||| ||||||||    
T  33528535 gagcataaaacatcgcttcgccatgacgtaaggatgaatttagccattcgaagtcatctgaaggtccaaaa 33528465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 392
Target Start/End: Original strand, 1151056 - 1151156
Alignment:
Q  292 cggcccattagagtttgttatttccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaat-aaaattatcgagaacttttctca 390  Q
    |||| |||||| ||||||||||||| |  ||||||| | |||| || ||||||||||| | ||||||||| ||||| |||||||| ||| ||||||||||    
T  1151056 cggctcattagggtttgttatttccctggtatttaagctaaacattcgtagcctaagaaacagtttttcattcaataaaaattatagag-acttttctca 1151154  T
Q  391 at 392  Q
    ||    
T  1151155 at 1151156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 384
Target Start/End: Complemental strand, 33528398 - 33528308
Alignment:
Q  294 gcccattagagtttgttatttccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattatcgagaactt 384  Q
    ||||||||| |||| |||||||| || ||||||| | |||  || |||| |||||| | | ||||||| ||||||||||||| ||||||||    
T  33528398 gcccattagggtttattatttccctagtatttaagctaaagatttgtaggctaagagacactttttcattcaataaaattatagagaactt 33528308  T

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Target: scaffold0154 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 375
Target Start/End: Complemental strand, 28967 - 28891
Alignment:
Q  298 attagagtttgttatttccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattat 375  Q
    ||||| ||||||||||||| || |||||||||| |||||||||||| |||||   ||||||||| | |||||||||||    
T  28967 attagggtttgttatttccctagtatttaaacataactttggtagcttaaga-gtagtttttcattgaataaaattat 28891  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 15385127 - 15385090
Alignment:
Q  355 tttttcaatcaataaaattatcgagaacttttctcaat 392  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  15385127 tttttcattcaataaaattatcgagaacttttctcaat 15385090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 388
Target Start/End: Complemental strand, 35160963 - 35160867
Alignment:
Q  292 cggcccattagagtttgttatttccataa-tatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattatcgagaacttttct 388  Q
    ||||| ||||| |||| |||||||| | | |||||||||| ||||||||||| ||||||    | |||||| ||||||||||||||||||||||||||    
T  35160963 cggcctattagggttttttatttcccttagtatttaaacagaactttggtagtctaagaggccg-ttttcattcaataaaattatcgagaacttttct 35160867  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 385
Target Start/End: Complemental strand, 36844566 - 36844473
Alignment:
Q  292 cggcccattagagtttgttatttccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattatcgagaacttt 385  Q
    |||||||||||  ||| |||||||| || ||||||||| ||||||| || | ||||||    |||||||| | |||||||||||||||||||||    
T  36844566 cggcccattaggatttattatttccctagtatttaaactaaactttcgtcgtctaagaggttgtttttcatttaataaaattatcgagaacttt 36844473  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 376
Target Start/End: Original strand, 7775272 - 7775355
Alignment:
Q  292 cggcccattagagtttgttatttccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattatc 376  Q
    |||| |||||||||||||||||||| | |||||||| | |||| || ||||||||||| | | |||| || ||||||||||||||    
T  7775272 cggctcattagagtttgttatttcc-ttatatttaagctaaacattcgtagcctaagagacatttttccattcaataaaattatc 7775355  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 392
Target Start/End: Original strand, 5841165 - 5841257
Alignment:
Q  299 ttagagtttgttatttccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattatcgagaacttttctcaat 392  Q
    |||| ||||||| ||||| || ||||| ||| |||| || |||||||||||  |   |||||| ||||||||||||||||||||||||||||||    
T  5841165 ttagggtttgttgtttccctagtattttaactaaacatttgtagcctaaga-gactattttcattcaataaaattatcgagaacttttctcaat 5841257  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 3273414 - 3273493
Alignment:
Q  304 gtttgttatttccataatatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattatcgagaact 383  Q
    ||||||||||||| || ||||||||| |||| ||  |||| ||| ||  ||||||||| |||||||||||||||| ||||    
T  3273414 gtttgttatttccttagtatttaaactaaacattcatagcgtaatatccagtttttcattcaataaaattatcgaaaact 3273493  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 392
Target Start/End: Complemental strand, 22572614 - 22572524
Alignment:
Q  302 gagtttgttatttcca-taatatttaaacaaaactttggtagcctaagataaagtttttcaatcaataaaattatcgagaacttttctcaat 392  Q
    |||||||||||||||  || |||||||| | ||||||||||| ||||||   |  |||||||| |||||||| |||||||||||||||||||    
T  22572614 gagtttgttatttcctctattatttaaatagaactttggtagtctaagaggca-cttttcaataaataaaataatcgagaacttttctcaat 22572524  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 11737575 - 11737531
Alignment:
Q  56 gatgaagtagcgcgcaaaaaatgctcaataaaaatagtgtagatt 100  Q
    |||||||| |||||||| ||| ||||||| |||||||||||||||    
T  11737575 gatgaagtggcgcgcaagaaaggctcaatgaaaatagtgtagatt 11737531  T

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