View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7429_high_16 (Length: 311)
Name: NF7429_high_16
Description: NF7429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7429_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 22 - 155
Target Start/End: Complemental strand, 52591540 - 52591407
Alignment:
| Q |
22 |
taactttttccatgaaatttatgagtaccaaaataacaatgaatctgatttacatactactttaaagacaaagataatagaatgcttaatatgataaaca |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
52591540 |
taactttttccatgaaatttatgagtaccaaaataacaatgaatctcatttacatactactttaaagacaaagataatagaatgcataatatgataaaca |
52591441 |
T |
|
| Q |
122 |
aaatcaataaaatatataaacctagtttttccac |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
52591440 |
aaatcaataaaatatataaacctagtttttccac |
52591407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 192 - 293
Target Start/End: Complemental strand, 52591373 - 52591272
Alignment:
| Q |
192 |
gtttttgttttcatgcaagtgagcattcaggaggggggccttgaggaaatcgcttagtatcagtgcaataattgtaaatcatgtaattcttttgcaccca |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52591373 |
gtttttgttttcatgcaagtgagcattcaggagggaggccttgaggaaatcgcttagtatcagtgcaataattgtaaatcatgtaattcttttgcaccca |
52591274 |
T |
|
| Q |
292 |
tt |
293 |
Q |
| |
|
|| |
|
|
| T |
52591273 |
tt |
52591272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 282
Target Start/End: Complemental strand, 53495618 - 53495587
Alignment:
| Q |
251 |
tcagtgcaataattgtaaatcatgtaattctt |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
53495618 |
tcagtgcaataattgtaaatcatgtaattctt |
53495587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 53502718 - 53502660
Alignment:
| Q |
236 |
ggaaatcgcttagtatcagtgcaataattgtaaatcatgtaattcttttgcacccattt |
294 |
Q |
| |
|
|||||||| || ||||| |||| |||||||| |||||||||||||| ||||||||||| |
|
|
| T |
53502718 |
ggaaatcgttttgtatctttgcagtaattgtatatcatgtaattcttctgcacccattt |
53502660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 53488485 - 53488526
Alignment:
| Q |
255 |
tgcaataattgtaaatcatgtaattcttttgcacccatttga |
296 |
Q |
| |
|
|||| ||||||||||||||||||||||| || |||||||||| |
|
|
| T |
53488485 |
tgcagtaattgtaaatcatgtaattcttctggacccatttga |
53488526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 16942949 - 16942908
Alignment:
| Q |
250 |
atcagtgcaataattgtaaatcatgtaattcttttgcaccca |
291 |
Q |
| |
|
||||||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
16942949 |
atcagtgcagtaattatatatcatgtaattcttttgcaccca |
16942908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 17013614 - 17013573
Alignment:
| Q |
250 |
atcagtgcaataattgtaaatcatgtaattcttttgcaccca |
291 |
Q |
| |
|
||||||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
17013614 |
atcagtgcagtaattatatatcatgtaattcttttgcaccca |
17013573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University