View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7429_high_17 (Length: 296)

Name: NF7429_high_17
Description: NF7429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7429_high_17
NF7429_high_17
[»] chr1 (1 HSPs)
chr1 (1-296)||(50963978-50964273)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 50963978 - 50964273
Alignment:
Q  1 ttgaaaattcatagtttggttggaagctnnnnnnngttagccagatgttgttatagttaggatcgaacttggatacccccgatataatttgcttaatcga 100  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50963978 ttgaaaattcatagtttggttggaagctaaaaaaagttagccagatgttgttatagttaggatcgaacttggatacccccgatataatttgcttaatcga 50964077  T
Q  101 aagttgaacgtccaagtaggtagctagattggtgaccataaagaaattttaaacaaggaggtgcagggttcaaaaaactagcatcatatgttcacgannn 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  50964078 aagttgaacgtccaagtaggtagctagattggtgaccataaagaaattttaaacaaggaggtgcagggttcaaaaaactagcatcatatgttcacgattt 50964177  T
Q  201 nnnncgaacagtacatgaatttgcaacatacatgtgattggaagttgggaatgttgagagttatgttgcttcgttggtgttgttgtttgtgggtat 296  Q
        |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50964178 ttttcgaacagtacatgaatttgcaacatatatgtgattggaagttgggaatgttgagagttatgttgcttcgttggtgttgttgtttgtgggtat 50964273  T

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