View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7429_high_20 (Length: 247)
Name: NF7429_high_20
Description: NF7429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7429_high_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 43030054 - 43030268
Alignment:
| Q |
19 |
ttaaattcacaactttttgtaatgcaaaagtttacaaagtcatacatgagtgatcccttgtaggttgtgatgttaatcctattatcatttacttccttct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43030054 |
ttaaattcacaactttttgtaatgcaaaagtttacaaagtcatacatgagtgatcccttgtaggttgtgatgttaatcctattatcatgtacttccttct |
43030153 |
T |
|
| Q |
119 |
aaaacttcctctatatgtaacttctactttcacacctcttcagtctttcttaatctgcatgaatgataccacaaagatttcgtggtcagatagtgtttaa |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43030154 |
aaaacttcctctatatg--acttctactttcacacctcttcagtctttcttaatctgcatgaatgataccacaaagatttcgtggtcagatagtgtttaa |
43030251 |
T |
|
| Q |
219 |
cttttaaagatgatatt |
235 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
43030252 |
cttttaaagatgatatt |
43030268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 46528420 - 46528209
Alignment:
| Q |
19 |
ttaaattcacaactttttgtaatgcaaaagtttacaaagtcatacatgagtgatcccttgtaggttgtgatgttaatcctattatcatttacttccttct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||| ||||| || ||||||||||||||||||||||| ||||| | ||||||||||| |
|
|
| T |
46528420 |
ttaaattcacaactttttgtaatgcaaaaaattacaaagccatacctgagt--tctcttgtaggttgtgatgttaatccagttatcctgtacttccttct |
46528323 |
T |
|
| Q |
119 |
aaaacttcctctatatgtaacttctactttcacacctcttcagtctttcttaatctgcatgaatgataccacaaagatttcgtggtcagatagtgtttaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | || |||||||||||||| ||| |||||||||||||||||| | ||| ||||||| |||| |
|
|
| T |
46528322 |
aaaacttcctctatatgtaacttctactttcacacctttcaaggctttcttaatctgcttgagtgataccacaaagatttctttgtcggatagtgcttaa |
46528223 |
T |
|
| Q |
219 |
cttttaaagatgat |
232 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
46528222 |
tttttggagatgat |
46528209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University