View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7429_high_3 (Length: 622)
Name: NF7429_high_3
Description: NF7429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7429_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 115 - 325
Target Start/End: Complemental strand, 29416472 - 29416262
Alignment:
| Q |
115 |
tcatctgtttcttgtgcatctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaagatttgattacagttctgtttttactggtt |
214 |
Q |
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| T |
29416472 |
tcatctgtttcttgtgcatctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaagatttgattacagttctgtttttactggtt |
29416373 |
T |
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| Q |
215 |
tactgttctatcattttccaaccaatgtgaagttccattctcatcaaagtatcactaaaggaggcacctaccttagtgtttgttttaatttgccttctct |
314 |
Q |
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| T |
29416372 |
tactgttctatcattttccaaccaatgtgaagttccattctcatcaaagtatcactaaaggaggcacctaccttagtgtttgttttaatttgccttctct |
29416273 |
T |
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| Q |
315 |
tccaacaaaaa |
325 |
Q |
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| T |
29416272 |
tccaacaaaaa |
29416262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 425 - 612
Target Start/End: Complemental strand, 29416162 - 29415975
Alignment:
| Q |
425 |
gtgccactgaattaaactatttatgtaatcctcaactttagttacaagggcctaagattggcttggctgcagtcgtgaattcaccaatagcgaatctcag |
524 |
Q |
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| T |
29416162 |
gtgccactgaattaaactatttatgtaatcctcaactttagttacaagggcctaagattggcttggctgcagtcgtgaattcaccaatagcgaatctcag |
29416063 |
T |
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| Q |
525 |
tcatcaatctacaatcctagcggctttgtatacgcaatgtggatctcagaagtttcacacacaattgaatctcggcagttcatttcat |
612 |
Q |
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| T |
29416062 |
tcatcaatctacaatcctagaggctttgtatacgcaatgtggatctcagaagtttcacacacaattgaatctcggcagttcatttcat |
29415975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 24655867 - 24655971
Alignment:
| Q |
18 |
tcattgagcaaggatgtttaattttacgtcattattagattatgttactgaggtagaatcaatgtactgatgcagagaatacaatggactgttaatgtca |
117 |
Q |
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| T |
24655867 |
tcattgaactaggatgtttaattttacgtcattattggattatgttactgaggtagaatcaatgtactgatgcagagaatacaatggactgttaatgtca |
24655966 |
T |
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| Q |
118 |
tctgt |
122 |
Q |
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||||| |
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| T |
24655967 |
tctgt |
24655971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 24655955 - 24656048
Alignment:
| Q |
134 |
ctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaagatttgattacagttctgtttttactggtttactgttctatca |
227 |
Q |
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| T |
24655955 |
ctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaaggtttgattacagttctgtttttacttgtttactgttctatca |
24656048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 29416530 - 29416470
Alignment:
| Q |
18 |
tcattgagcaaggatgtttaattttacgtcattattagattatgttactgaggtagaatca |
78 |
Q |
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| T |
29416530 |
tcattgagcaaggatgtttaattttacgtcattattagattatgttactgaggtagaatca |
29416470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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