View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7429_high_4 (Length: 524)
Name: NF7429_high_4
Description: NF7429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7429_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Complemental strand, 8088222 - 8087749
Alignment:
| Q |
19 |
agtcggtctcaacgcaaatatgttgaaggttcatgttggttgctttctccaaggcaaacaaacaggcactgaatttagcttctaggggagttgcgtgcca |
118 |
Q |
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| T |
8088222 |
agtcagtctcaacgtaaatatgttaaaggttcatgttggttgctttctccaaggcaaacaaacagacactaaatttagcttctgggggagttgcgtgcca |
8088123 |
T |
|
| Q |
119 |
aatattttaagcaatataatatactaaatatatatagttaggttcacataccttaatcatttggtcacgcaaatctacagcaaagatgcccaagattgaa |
218 |
Q |
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| T |
8088122 |
aatattttgagcaatataatatactaaatatatatagttaggttcacataccttaatcatttggtcacgcaaatctacagcagagatgcccaagattgaa |
8088023 |
T |
|
| Q |
219 |
gcataatttatatcacatactggaaacctagcattatcaaacttatgcaaagtttgcacctccattttgtacctagaacannnnnnnnnnngtgaacaag |
318 |
Q |
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| T |
8088022 |
gcataatttatatcacatactggaaacctagcattatcaaacttatgcaaagcttgcacctccatcttgta--------------ttatttttgaacaag |
8087937 |
T |
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| Q |
319 |
tagatcattttatttaggtcattaacaatggatacaattgtggtgattgcttaatagttgcctaataaagctccataaataaatacctcggaatggcctt |
418 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8087936 |
tagaacattttatttaggtcattaacaatgaatacaattgtggtgatttcttgatagttgcctaataaagctccataaataaatacctcggaatggcctt |
8087837 |
T |
|
| Q |
419 |
atcatttttatggttatacatacatgtgtattttccattttccaacttgcaaactttggtacagtctttacatccatgaaacgtctat |
506 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| |
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| T |
8087836 |
atcatttttgtggttatccatacatgtgtattttccattttccaagttgcaaactttggtacagtctttacatccatcatacgtctat |
8087749 |
T |
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