View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7429_high_7 (Length: 457)
Name: NF7429_high_7
Description: NF7429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7429_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 15 - 440
Target Start/End: Original strand, 42025831 - 42026256
Alignment:
| Q |
15 |
ccatcgttttgattgagggaaacctaagttactcaaacaaaataagtatagataatgaatctcacgtctgtttatgattggtgggcgtggaagctcatca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42025831 |
ccatcgttttgattgagggaaacctaagttactcaaacaaaataagtatagataatgaatctcacgtctgtttatgattggtgggcgtggaagctcatca |
42025930 |
T |
|
| Q |
115 |
gctacagtcctagtaggaggcatagagaaatcatttggtgcatttatatggttcatcataaaatttggagctgggtttggcatctcctcctgctgcaagn |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42025931 |
gctacagtcctagtaggaggcatagagaaatcatttggtgcatttatatggttcatcataaaatttggagctgggtttggcatctcctcctgctgcaagg |
42026030 |
T |
|
| Q |
215 |
nnnnnnnnntgcatcaacaccacaaaaattatacttaattagaacttagatgtaaagtaattaatgtatggtatataaaatggtaagagtagaaaagata |
314 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42026031 |
aaaaaaaaaatcatcaacaccacaaaagttatacttaattagaacttagatgtaaagtaattaatgtatggtatataaaatggtaagagtagaaaagata |
42026130 |
T |
|
| Q |
315 |
agagggaaaaaagaaagtataaccagaaggttatgatgagttggggagaagaaagagtgtcccaaatgaaactgattaggggatggcagaagtaatgcac |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42026131 |
agagggaaaaaagaaagtataaccagaaggttatgatgagttggggagaagaaagagtgtcccaaatgaaactgattaggggatggcagaagtaatgcac |
42026230 |
T |
|
| Q |
415 |
gcatgttaactggaagcagattagtg |
440 |
Q |
| |
|
||||||| |||||||||||||||||| |
|
|
| T |
42026231 |
gcatgttgactggaagcagattagtg |
42026256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University