View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7429_high_8 (Length: 455)
Name: NF7429_high_8
Description: NF7429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7429_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 7 - 255
Target Start/End: Complemental strand, 10242148 - 10241899
Alignment:
| Q |
7 |
tcgaagaatattttacctaagtggtttgtgaggacatgagcaagaataaaaaccaatctaaacctagatatcatggaaatctaagaaacagcccaatctt |
106 |
Q |
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| T |
10242148 |
tcgaagaaaattgtacctaagtggtttgtgaggacatgagcaagaataaaaaccaatctaaacctagatatcatggaaatctaagaaacagcccaatctt |
10242049 |
T |
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| Q |
107 |
tctcattcttcgagtttttaaggtcccatgtcttcggtcatgacgtattgcgatagcaaatctc-aactcaatcctataagtcatgaacgcatcaagcat |
205 |
Q |
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| T |
10242048 |
tctcattcttcgagtttttaaggtcccatgtcttcggtcatgacattttgcgatagcaaatctcaaactcgatcctataagtcatgaacgcatcaagcat |
10241949 |
T |
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| Q |
206 |
gtggacatcgattgtcccttcgtttgcgagcatgtgaagtctcagtttct |
255 |
Q |
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| T |
10241948 |
gtggacatcgattgtcccttcatttgcgagcatgtgaagtctcagtttct |
10241899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 324 - 440
Target Start/End: Complemental strand, 10241367 - 10241253
Alignment:
| Q |
324 |
atcattctttctattgtttttaaaactatcaatgtggggctattttaatatgttcgtttgaatgcctaaactagttatagactatactatataagatatc |
423 |
Q |
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| T |
10241367 |
atcattctttctattgtttttaaaactatcaatgtggggctattttaatatgttcgtttgaattcctaaactagt--tagagtatactaaataagatatc |
10241270 |
T |
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| Q |
424 |
aagatccatgtagaata |
440 |
Q |
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| T |
10241269 |
aagattcatgtagaata |
10241253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 268 - 436
Target Start/End: Complemental strand, 10253618 - 10253453
Alignment:
| Q |
268 |
aaaaccactagcacgatggaataaacaaatgagatggacggaagttttataaataaatcattctttctattgtttttaaaactatcaatgtggggctatt |
367 |
Q |
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| T |
10253618 |
aaaaccactagcacgatggaatcaacaaatgagatggcctgcagttttatagatgaatcattctctctattg-ttttaaaactatcaatgtgggattatt |
10253520 |
T |
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| Q |
368 |
ttaatatgttcgtttgaatgcctaaactagttatagactatactatataagatatcaagatccatgtag |
436 |
Q |
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| T |
10253519 |
ttaatatgttggtttgaatgctttaacta--tcgagagcatactatataagctatcaagatccatgtag |
10253453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 397
Target Start/End: Complemental strand, 10243750 - 10243693
Alignment:
| Q |
340 |
tttttaaaactatcaatgtggggctattttaatatgttcgtttgaatgcctaaactag |
397 |
Q |
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| T |
10243750 |
tttttaaaactctcgatgttggactatttttatatgttcgtttgaatgcttaaactag |
10243693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 10266297 - 10266225
Alignment:
| Q |
183 |
taagtcatgaacgcatcaagcatgtggacatcgattgtcccttcgtttgcgagcatgtgaagtctcagtttct |
255 |
Q |
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| T |
10266297 |
taagtcatgaactctcctagcatgtggaaatcgattgtcccttcatttgtgagaatgtgaagtttcaatttct |
10266225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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