View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7429_low_1 (Length: 857)
Name: NF7429_low_1
Description: NF7429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7429_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 37214779 - 37214544
Alignment:
| Q |
17 |
agaacacaaccatgtctccaaggattcaaaaaaggaagaacttggcggagtccaaaaccaatgctaacaacagccaggtaaattttgacccactttctta |
116 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37214779 |
agaacacaaccatgtctccaaggattaaaaaaaggaagaacttggcggagtccaaaaccaaagctaaca-cagccaggtaaattttgacccactttctta |
37214681 |
T |
|
| Q |
117 |
atgttgctgtaatgtatagtatgcatgatatgaaattagattaaacactagtatgcttgttttagttagcttctgtggatttcatgatgattttccctta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37214680 |
atgttgctgtaatgtatagtatgcatgatatgaaattagattaaacactagtatgcttgttttagttagcttctgtggatttcatgatgattttccctta |
37214581 |
T |
|
| Q |
217 |
taaaatgtaaaaattacataaaggaggcatttttatt |
253 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37214580 |
taaaatgtaaaaattacataaaggaggtatttttatt |
37214544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 612 - 730
Target Start/End: Complemental strand, 37213145 - 37213027
Alignment:
| Q |
612 |
actcacagtagggagacagtgttaaaggaaaatttcttcaatgtttaccttagcattcaatacaacatgtttggttatttataacaatgcaaaaattctt |
711 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||||| ||| |||| ||||| || |||| ||||| ||||||| |||||||||||| |||| |||| |
|
|
| T |
37213145 |
actcacagtaggaagtaagtgttaaaggaaattttctataatatttagtttagccttgaatagaacatttttggttgtttataacaatggaaaacctctt |
37213046 |
T |
|
| Q |
712 |
catcaatgtatatgcttag |
730 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
37213045 |
catcaatgtatatgcttag |
37213027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 671 - 741
Target Start/End: Complemental strand, 37203833 - 37203763
Alignment:
| Q |
671 |
atacaacatgtttggttatttataacaatgcaaaaattcttcatcaatgtatatgcttagtactcaatatc |
741 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
37203833 |
atacaacacttttggttgtttataacaaagcaaaacctctttatcaatgtatatgcttagtactcaatatc |
37203763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 641 - 688
Target Start/End: Complemental strand, 37218502 - 37218455
Alignment:
| Q |
641 |
aaatttcttcaatgtttaccttagcattcaatacaacatgtttggtta |
688 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||| |||||||| |
|
|
| T |
37218502 |
aaatttcttcaatctttaccttagctttcaatacaacatttttggtta |
37218455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 708 - 741
Target Start/End: Original strand, 413037 - 413070
Alignment:
| Q |
708 |
tcttcatcaatgtatatgcttagtactcaatatc |
741 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
413037 |
tcttcatcaatgtatatgcttagtactcaatatc |
413070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 7528839 - 7528806
Alignment:
| Q |
710 |
ttcatcaatgtatatgcttagtactcaatatcat |
743 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
7528839 |
ttcatcaatgtataagcttagtactcaatatcat |
7528806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University