View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7429_low_11 (Length: 423)
Name: NF7429_low_11
Description: NF7429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7429_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Original strand, 2051462 - 2051856
Alignment:
| Q |
19 |
ccataataactactactactagcccttgatgttggaactacaacaagtgctgaatttgattcttcgcatgtaaccaactttctcattatgtagttaccta |
118 |
Q |
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| T |
2051462 |
ccataataactactactactagcccttgatgttggaactacaacaagtgctgaatttgattcttcacatgtaaccaactttctcattatgtagttaccta |
2051561 |
T |
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| Q |
119 |
agcacttttttgtctttttgattgctcccatgatctttgccattggtcttggtggttgtctctttgatttttcttttcttgcaagtttgagaatttctag |
218 |
Q |
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| T |
2051562 |
agcacttttttgtctttttgattgctcccatgatctttgccattggtcttggtggttgtctctttgctttttcttttcttgcaagtttgagaatttctag |
2051661 |
T |
|
| Q |
219 |
cctgtgtttggctatggagattcccatgctttggagaaattcatggttgaagtaaaccatgtcttcttgttctagctcattgtgtgcaaaagtgagacca |
318 |
Q |
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| T |
2051662 |
cctgtgtttggctatggagattcccatgctttggagaaattcatggttgaagtaaaccatgtcttcttgttctagctcattgtgtgcaaaagtgagacca |
2051761 |
T |
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| Q |
319 |
tactcatacacaagagatggatcaaggtttgtttttgaaagccaagaaaaccaatccatggttggtaagttgaagcaagtgtttgtgcgtgtgtg |
413 |
Q |
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| T |
2051762 |
tactcatacacaagagatggatcaaggtttgtttttgaaagccaagaaaaccaatccatggttggtaagttgaaggaagtgtttgtgtgtgtgtg |
2051856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 48069903 - 48069832
Alignment:
| Q |
202 |
agtttgagaatttctagcctgtgtttggctatggagattcccatgctttggagaaattcatggttgaagtaa |
273 |
Q |
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| T |
48069903 |
agtttgagaatctctagtctgtgtttggctattgagattcccatgctttgtagaaactcatggttgaagtaa |
48069832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 190 - 379
Target Start/End: Complemental strand, 44907944 - 44907755
Alignment:
| Q |
190 |
tcttttcttgcaagtttgagaatttctagcctgtgtttggctatggagattcccatgctttggagaaattcatggttgaagtaaaccatgtcttcttgtt |
289 |
Q |
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|||||| | ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| || |
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| T |
44907944 |
tcttttttagcaagcttgagaatttctaatctgtgtttggctatggagattcccatgctttggagaaactcatggttgaagtaaaacatgtcttcttctt |
44907845 |
T |
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| Q |
290 |
ctagctcattgtgtgcaaaagtgagaccatactcatacacaagagatggatcaaggtttgtttttgaaagccaagaaaaccaatccatgg |
379 |
Q |
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| T |
44907844 |
caagctcgttttgtgcaaagacaaggccatactcatatacaagagatggctcaagattggtttttgatagccatgaaaaccaatccatgg |
44907755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 200 - 271
Target Start/End: Original strand, 22537599 - 22537670
Alignment:
| Q |
200 |
caagtttgagaatttctagcctgtgtttggctatggagattcccatgctttggagaaattcatggttgaagt |
271 |
Q |
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|||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||| || |||||||||| |
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| T |
22537599 |
caagattgagaatttctagcctgtgtttggctattgaaattcccatgctttgaagaaactcgtggttgaagt |
22537670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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