View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7429_low_15 (Length: 385)
Name: NF7429_low_15
Description: NF7429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7429_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 1013136 - 1013004
Alignment:
| Q |
13 |
aatataaaatcattttctccatttgctcctttttgcatcattattgaacatcgtatataagcaaggtatatgttgtatggcttgaatgcatcacttttaa |
112 |
Q |
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| T |
1013136 |
aatataaaatcattttctccatttgctcctttttgcatcattattgaacatcgtatataagcaaggtatatgttgtatggcttgaatgcatcacttttaa |
1013037 |
T |
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| Q |
113 |
ctctaaatcttggctcaacgatcactccgatag |
145 |
Q |
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| T |
1013036 |
ctctaaatcttggctcaacgatcactccgatag |
1013004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 235 - 329
Target Start/End: Complemental strand, 1012914 - 1012820
Alignment:
| Q |
235 |
gttagaaatatgagttatcaagctcctagaaatagcttagataaggtatggtatcatcattaatgtttgatttcataataaagtatgccatcatc |
329 |
Q |
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| T |
1012914 |
gttagaaatatgagttatcaagctcctagaaatagcttagataaggtatggtatcatcattaatgtttgatttcataataaagtatgccatcatc |
1012820 |
T |
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