View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7429_low_16 (Length: 356)
Name: NF7429_low_16
Description: NF7429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7429_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 339
Target Start/End: Original strand, 28238968 - 28239297
Alignment:
| Q |
10 |
agtgagaagaacaaatctcagaataatgatgaaatcaaaggagtatgttgatttctcacttgccttttgtgcatgactgcatgttaatcattgcattgtg |
109 |
Q |
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| T |
28238968 |
agtgacaagaacaaatctcagaataatgatgaaatcaaaggagtatgttgatttctcacttgccttgtgtgcatgactgcatgttaatcattgcattgtg |
28239067 |
T |
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| Q |
110 |
aaacatctcaacatgtatttcttttaagtatattggnnnnnnnnacgaaggagtctcgcaagaaatgctagaataatatgcagtagaaagacgattataa |
209 |
Q |
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| T |
28239068 |
aaacatctcaacatgtatttcatttgagtatattggttttttttacgaaggagtctcgcaagaaatgctagaaaaatatgcagtagaaagacaattataa |
28239167 |
T |
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| Q |
210 |
gtggtggatcacatcctcatcttacgttccaaatcagatttgtaggaagttctaagatacaacataaaaaaggtttatgcaacatccaaacatattttat |
309 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28239168 |
gtggtggatcaaatcctcatcttacgttccaaatcagatttgtaggaagttataagatacaacataaaaaaggtttatgcaacatccaaacatattttat |
28239267 |
T |
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| Q |
310 |
catctcactacaatgtcgatatatattatt |
339 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28239268 |
catctcactacaatgtcgatatatattatt |
28239297 |
T |
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