View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7429_low_17 (Length: 347)
Name: NF7429_low_17
Description: NF7429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7429_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 51 - 339
Target Start/End: Original strand, 35244699 - 35244979
Alignment:
| Q |
51 |
tctatctaacaagtgaactattatactgatgtttgtcttgttaaacttgtttgtattactttactactaatattctcactatgttcattgaaaatttgca |
150 |
Q |
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| T |
35244699 |
tctatctaacaagtgaactattatactgatgtttgtcttgttaaacttgtttgtattact--------aatattctcactatgttcattgaaaatttgca |
35244790 |
T |
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| Q |
151 |
aatggattgtgattcttaaaatgcttttatgtattttttcttgtctaggattgggactcacaaaacgcatcacaaattgctactgagttatgtggctttg |
250 |
Q |
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| T |
35244791 |
aatggattgtgattcttaaaatgcttttatgtattttttcttgtctaggactgggactcacaaaacgcatcacaaattgctactgagttatgtggctttg |
35244890 |
T |
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| Q |
251 |
tcacaattttatcaggaacatttctccttcacaagacaaaagatatgggaaataaacaacccgaacaatctcctgcttcttcaacacca |
339 |
Q |
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| T |
35244891 |
tcacaattttatcaggaacatttctccttcacaagacaaaagatatgggaaataaaccacccgaacaatctcctgcttcttcaacacca |
35244979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 307
Target Start/End: Complemental strand, 37890219 - 37890109
Alignment:
| Q |
197 |
aggattgggactcacaaaacgcatcacaaattgctactgagttatgtggctttgtcacaattttatcaggaacatttctccttcacaagacaaaagatat |
296 |
Q |
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|||| |||||||||||| | || || || |||| || ||||| || || ||||| ||||||||||| || ||||| ||||||||||| || || ||||| |
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| T |
37890219 |
aggaatgggactcacaagatgcgtctcagattgtgacagagttgtgcgggtttgtgacaattttatctgggacattcctccttcacaaaactaaggatat |
37890120 |
T |
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| Q |
297 |
gggaaataaac |
307 |
Q |
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| T |
37890119 |
gggaaataaac |
37890109 |
T |
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